Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes - Wikidata - awgldk - TriplyDB

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

http://www.wikidata.org/entity/Q24792536

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Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity Computational tools and algorithms for designing customized synthetic genes Analysis of Synonymous Codon Usage Bias of Zika Virus and Its Adaption to the Hosts Conflicting phylogenies for early land plants are caused by composition biases among synonymous substitutions CodonO: codon usage bias analysis within and across genomes.Why genes evolve faster on secondary chromosomes in bacteria Comparison of the 'Ca. Liberibacter asiaticus' genome adapted for an intracellular lifestyle with other members of the Rhizobiales.Codon usage bias: causative factors, quantification methods and genome-wide patterns: with emphasis on insect genomes.Synonymous codon bias and functional constraint on GC3-related DNA backbone dynamics in the prokaryotic nucleoid.Exploration of multivariate analysis in microbial coding sequence modeling.Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes.Evolutionary rates and gene dispensability associate with replication timing in the archaeon Sulfolobus islandicus scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly Characterisation of divergent flavivirus NS3 and NS5 protein sequences detected in Rhipicephalus microplus ticks from Brazil Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages.A Comprehensive Analysis of Codon Usage Patterns in Blunt Snout Bream (Megalobrama amblycephala) Based on RNA-Seq Data Evolutionary interpretations of mycobacteriophage biodiversity and host-range through the analysis of codon usage bias.Evaluation of codon biology in citrus and Poncirus trifoliata based on genomic features and frame corrected expressed sequence tags.Performance Improvement of the Goertzel Algorithm in Estimating of Protein Coding Regions Using Modified Anti-notch Filter and Linear Predictive Coding Model.Antagonistic relationships between intron content and codon usage bias of genes in three mosquito species: functional and evolutionary implications Mutational pressure dictates synonymous codon usage in freshwater unicellular α - cyanobacterial descendant Paulinella chromatophora and β - cyanobacterium Synechococcus elongatus PCC6301.Variation in the correlation of G + C composition with synonymous codon usage bias among bacteria.Analysis of synonymous codon usage patterns in sixty-four different bivalve species.Translational selection of genes coding for perfectly conserved proteins among three mosquito vectors.Predicting gene expression level from relative codon usage bias: an application to Escherichia coli genome.Comparative Genomics of Trypanosomatid Pathogens using Codon Usage Bias.Selective pressure dominates the synonymous codon usage in parvoviridae.Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.A novel framework for evaluating the performance of codon usage bias metrics.Synonymous codon usage, GC(3), and evolutionary patterns across plastomes of three pooid model species: emerging grass genome models for monocots.Codon usage analysis of photolyase encoding genes of cyanobacteria inhabiting diverse habitats.“COI-like” Sequences Are Becoming Problematic in Molecular Systematic and DNA Barcoding Studies Deciphering the rationale behind specific codon usage pattern in extremophiles

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Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes

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2004 nî lūn-bûn

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2004 թուականի Յունիսին հրատարակուած գիտական յօդուած

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BMC Evolutionary Biology

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Andris Kleinhofs

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Dong Xu

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Jizhong Zhou

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Xiu-Feng Wan

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P2860

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

Synonymous codon usage is subject to selection in thermophilic bacteria.

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases

Diversity in G + C content at the third position of codons in vertebrate genes and its cause

Asymmetric directional mutation pressures in bacteria

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

Compositional constraints and genome evolution

The relationship between synonymous codon usage and protein structure.

Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis.

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