A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
about
A genomic survey of the fish parasite Spironucleus salmonicida indicates genomic plasticity among diplomonads and significant lateral gene transfer in eukaryote genome evolutionAn exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sistersComparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthusCommunity-wide analysis of microbial genome sequence signaturesVirus-host coevolution: common patterns of nucleotide motif usage in Flaviviridae and their hostsSolving the riddle of codon usage preferences: a test for translational selectionCodon usage: nature's roadmap to expression and folding of proteinsAb initio gene identification in metagenomic sequencesEvolutionary rates vary among rRNA structural elementsQuantitative relationship between synonymous codon usage bias and GC composition across unicellular genomesAsymmetric directional mutation pressures in bacteriaComparative context analysis of codon pairs on an ORFeome scale.The relationship of protein conservation and sequence lengthOn the species of origin: diagnosing the source of symbiotic transcriptsGenomic and proteomic adaptations to growth at high temperatureDo universal codon-usage patterns minimize the effects of mutation and translation error?Abundance of correctly folded RNA motifs in sequence space, calculated on computational gridsGenome wide distribution of illegitimate recombination events in Kluyveromyces lactisRelative amino acid composition signatures of organisms and environmentsSmall proteins: untapped area of potential biological importanceConflicting phylogenies for early land plants are caused by composition biases among synonymous substitutionsThe "naked coral" hypothesis revisited--evidence for and against scleractinian monophylyThe mitochondrial genome of the 'twisted-wing parasite' Mengenilla australiensis (Insecta, Strepsiptera): a comparative studyCodonO: codon usage bias analysis within and across genomes.Codon usage patterns in Nematoda: analysis based on over 25 million codons in thirty-two species.Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida.Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data AloneCodon usage is associated with the evolutionary age of genes in metazoan genomes.Analysis of Codon Usage Patterns in Herbaceous Peony (Paeonia lactiflora Pall.) Based on Transcriptome DataFirst genome data from uncultured upland soil cluster alpha methanotrophs provide further evidence for a close phylogenetic relationship to Methylocapsa acidiphila B2 and for high-affinity methanotrophy involving particulate methane monooxygenase.The compositional adjustment of amino acid substitution matrices.A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.Using the nucleotide substitution rate matrix to detect horizontal gene transferA novel series of compositionally biased substitution matrices for comparing Plasmodium proteinsComparison of methods for estimating the nucleotide substitution matrix.Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis.General rules for optimal codon choice.Computational identification of rare codons of Escherichia coli based on codon pairs preference.Survey of transcripts expressed by the invasive juvenile stage of the liver fluke Fasciola hepaticaBacillus anthracis genome organization in light of whole transcriptome sequencing
P2860
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P2860
A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
description
2001 nî lūn-bûn
@nan
2001 թուականին հրատարակուած գիտական յօդուած
@hyw
2001 թվականին հրատարակված գիտական հոդված
@hy
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
name
A simple model based on mutati ...... tion within and across genomes
@ast
A simple model based on mutati ...... tion within and across genomes
@en
A simple model based on mutati ...... tion within and across genomes
@nl
type
label
A simple model based on mutati ...... tion within and across genomes
@ast
A simple model based on mutati ...... tion within and across genomes
@en
A simple model based on mutati ...... tion within and across genomes
@nl
prefLabel
A simple model based on mutati ...... tion within and across genomes
@ast
A simple model based on mutati ...... tion within and across genomes
@en
A simple model based on mutati ...... tion within and across genomes
@nl
P2093
P2860
P3181
P1433
P1476
A simple model based on mutati ...... tion within and across genomes
@en
P2093
L F Landweber
R D Knight
S J Freeland
P2860
P304
RESEARCH0010
P3181
P356
10.1186/GB-2001-2-4-RESEARCH0010
P407
P577
2001-01-01T00:00:00Z