RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
about
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomesThe distributions, mechanisms, and structures of metabolite-binding riboswitchesThe genome of the obligately intracellular bacterium Ehrlichia canis reveals themes of complex membrane structure and immune evasion strategiesConfirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteriaUnique glycine-activated riboswitch linked to glycine-serine auxotrophy in SAR11Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAsYersinia pestis and Yersinia pseudotuberculosis infection: a regulatory RNA perspectiveMetabolite sensing in eukaryotic mRNA biologyAn atypical riboflavin pathway is essential for Brucella abortus virulenceMultiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalisEthanolamine activates a sensor histidine kinase regulating its utilization in Enterococcus faecalisYlxM is a newly identified accessory protein that influences the function of signal recognition particle pathway components in Streptococcus mutansA new approach for detecting riboswitches in DNA sequencesUsing the fast fourier transform to accelerate the computational search for RNA conformational switchesMaximum expected accuracy structural neighbors of an RNA secondary structureRegulatory small RNAs circumvent the conventional quorum sensing pathway in pandemic Vibrio cholerae.In silico analysis of phytoene synthase and its promoter reveals hints for regulation mechanisms of carotenogenesis in Duanliella bardawil.Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureusRiboswitch detection using profile hidden Markov models.Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array.Cloning, expression and characterization of a pectate lyase from Paenibacillus sp. 0602 in recombinant Escherichia coliShewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.Mining regulatory 5'UTRs from cDNA deep sequencing datasets.vttRA and vttRB Encode ToxR family proteins that mediate bile-induced expression of type three secretion system genes in a non-O1/non-O139 Vibrio cholerae strain.Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-SeqFunctional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.The Myxococcus xanthus spore cuticula protein C is a fragment of FibA, an extracellular metalloprotease produced exclusively in aggregated cellsComputational analysis of riboswitch-based regulationFinding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elementsGenome-wide detection of novel regulatory RNAs in E. coliTranscriptomic profiling of Yersinia pseudotuberculosis reveals reprogramming of the Crp regulon by temperature and uncovers Crp as a master regulator of small RNAs.Small RNAs in the genus ClostridiumSwiSpot: modeling riboswitches by spotting out switching sequences.RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.Computational identification of riboswitches based on RNA conserved functional sequences and conformationsComparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria.Transcription antitermination by a phosphorylated response regulator and cobalamin-dependent termination at a B₁₂ riboswitch contribute to ethanolamine utilization in Enterococcus faecalis.Analysing RNA-kinetics based on folding space abstractionComplete genomic sequence of bacteriophage felix o1.
P2860
Q21184040-86198298-57CB-42EB-829E-DF4B4488CB2AQ21184134-8A07C434-E9AE-4C7B-91B5-9E0814FB0901Q24548624-0326D993-78B8-4895-949C-FB6DAB489B85Q24650494-5B287005-611B-43A5-8127-93FD80378E2CQ24650852-CA2E86A7-4545-4182-9EF8-8D665699526BQ24669637-BEDDDBBE-3E9A-497E-8679-85F6CE164B41Q26781380-BF7E79D6-C0B8-4E38-8235-EB2821C424E8Q27013810-8E2EEFCC-4E98-4370-83DE-90E00EAAF559Q27333975-0E679131-0F40-4CAC-BCA1-3DEBACB2CCF1Q28236551-0499FCCE-8268-428E-89F2-E869CE3CA005Q28293257-B1265A73-2147-4A18-B63A-D2713D6EF88AQ28485478-97E67C77-4F43-4D52-9B14-C11C197B1D1DQ28610998-2CB481F2-160C-4F86-A4A3-28B167CF66BCQ28710262-5135C61D-F26C-4716-A53B-0442194D23A7Q28729733-8DD9E049-1F79-490A-88B3-61FFDD65F6DBQ30362198-F163A579-6A3E-475A-8B93-6BEA1ACFF880Q30404309-3AB714CB-161E-4CE6-BC33-2F575E352958Q33305151-142CBAAD-9D93-4424-8139-7CFF41DDBF3DQ33509394-8C09CCEA-3B3F-4580-ADF2-F4D752407457Q33525404-EB54B288-7390-4CFE-B2DA-043ADD722961Q33557322-9130B25D-24EF-4726-8610-2ADD491DFB3BQ33631984-7CAF522D-2618-4A46-B425-DAD33D3AFF82Q33674408-B549FB63-1D93-4254-8CDF-9C264D2982C7Q33719374-91F22F66-03D4-414F-A025-F967FFBE0F1AQ33877186-55B9D16D-E703-4A71-83F8-F3CAF305AD95Q34036328-B84EFCAD-1E21-4B96-A71E-AEDF9E4AF3A6Q34056933-58A97F7F-953C-4E43-B4B6-26B9E5DF71B1Q34103528-7C7E4E1D-7CB4-47F4-B186-42C9AD02CDA4Q34105562-D82A9A63-536A-49CB-A6C5-A022596BF5EAQ34143596-ED39C0D1-FB4B-40A0-9972-48DB23351D29Q34191891-862D2745-6FD1-4C88-8CA9-A6DC89DA3694Q34468976-7A06ECC6-2699-49F7-911C-19A928D7E3FEQ34514381-B4D3C927-50D0-442B-8D52-ED76FE347CC6Q34532946-5C3A4479-D4F9-4C0D-9A06-9E18DA6C8370Q34974253-2C4B4BD9-5A1A-4C1A-BCC7-377052144C95Q34982434-46A110B9-48A3-4DE6-A83D-F6036DF5577AQ34995607-A57FF0F6-A245-467C-8C36-AF32986C5A41Q35096115-2B7B8605-502C-495D-A5C7-CB9EFB6FC9F9Q35103849-108EB5C4-DA7F-470E-ABEF-85E91C1EB3F1Q35260869-BFB149CA-2355-4ED2-BE3B-E422878AC7B8
P2860
RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
description
2005 nî lūn-bûn
@nan
2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
RibEx: a web server for locati ...... bacterial regulatory elements
@ast
RibEx: a web server for locati ...... bacterial regulatory elements
@en
RibEx: a web server for locati ...... bacterial regulatory elements
@nl
type
label
RibEx: a web server for locati ...... bacterial regulatory elements
@ast
RibEx: a web server for locati ...... bacterial regulatory elements
@en
RibEx: a web server for locati ...... bacterial regulatory elements
@nl
prefLabel
RibEx: a web server for locati ...... bacterial regulatory elements
@ast
RibEx: a web server for locati ...... bacterial regulatory elements
@en
RibEx: a web server for locati ...... bacterial regulatory elements
@nl
P2860
P356
P1476
RibEx: a web server for locati ...... bacterial regulatory elements
@en
P2093
Enrique Merino
P2860
P304
P356
10.1093/NAR/GKI445
P407
P433
Web Server issue
P577
2005-07-01T00:00:00Z