Free energy landscape of protein folding in water: explicit vs. implicit solvent
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Folding very short peptides using molecular dynamicsDelPhi: a comprehensive suite for DelPhi software and associated resourcesBalancing solvation and intramolecular interactions: toward a consistent generalized Born force fieldCombinatorial pattern discovery approach for the folding trajectory analysis of a beta-hairpin.Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsThe distinct conformational dynamics of K-Ras and H-Ras A59GThe unfolded state of the villin headpiece helical subdomain: computational studies of the role of locally stabilized structureMolecular dynamics and protein function.The protein folding problemIntegrated Modeling Program, Applied Chemical Theory (IMPACT)Similarity and difference in the unfolding of thermophilic and mesophilic cold shock proteins studied by molecular dynamics simulationsElectronic polarization stabilizes tertiary structure prediction of HP-36.Protein folding by zipping and assemblyProtein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments.A test on peptide stability of AMBER force fields with implicit solvationMolecular Simulations Find Stable Structures in Fragments of Protein G.Proteins in binary solventsThe VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling.Application of replica exchange umbrella sampling to protein structure refinement of nontemplate models.Structural characterization of MG and pre-MG states of proteins by MD simulations, NMR, and other techniques.Use of 13C(alpha) chemical shifts for accurate determination of beta-sheet structures in solutionBenchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragmentHigh resolution approach to the native state ensemble kinetics and thermodynamics.Electrostatic solvation energy for two oppositely charged ions in a solvated protein system: salt bridges can stabilize proteins.Investigations of α-helix↔β-sheet transition pathways in a miniprotein using the finite-temperature string methodAb initio simulation of a 57-residue protein in explicit solvent reproduces the native conformation in the lowest free-energy cluster.Generalized Scalable Multiple Copy Algorithms for Molecular Dynamics Simulations in NAMD.Does water play a structural role in the folding of small nucleic acids?Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.Speed of conformational change: comparing explicit and implicit solvent molecular dynamics simulationsChallenges in protein folding simulations: Timescale, representation, and analysisComputational design and experimental discovery of an antiestrogenic peptide derived from alpha-fetoproteinA strategy for reducing gross errors in the generalized Born models of implicit solvation.OptZyme: computational enzyme redesign using transition state analoguesKECSA-Movable Type Implicit Solvation Model (KMTISM).On the role of electrostatics in protein-protein interactions.Improved Generalized Born Solvent Model Parameters for Protein Simulations.Prediction of the structure of a silk-like protein in oligomeric states using explicit and implicit solvent models.Challenges, applications, and recent advances of protein-ligand docking in structure-based drug design.Constrained Unfolding of a Helical Peptide: Implicit versus Explicit Solvents
P2860
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P2860
Free energy landscape of protein folding in water: explicit vs. implicit solvent
description
2003 nî lūn-bûn
@nan
2003 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
name
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@ast
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@en
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@nl
type
label
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@ast
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@en
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@nl
prefLabel
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@ast
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@en
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@nl
P3181
P356
P1433
P1476
Free energy landscape of protein folding in water: explicit vs. implicit solvent
@en
P2093
Ruhong Zhou
P304
P3181
P356
10.1002/PROT.10483
P407
P577
2003-11-01T00:00:00Z