Identification of transcription factor binding sites with variable-order Bayesian networks
about
MUSI: an integrated system for identifying multiple specificity from very large peptide or nucleic acid data setsInclusion of neighboring base interdependencies substantially improves genome-wide prokaryotic transcription factor binding site predictionVOMBAT: prediction of transcription factor binding sites using variable order Bayesian treesAnalysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic CellsSpecificity and nonspecificity in RNA-protein interactionsProtein-DNA binding in high-resolutionVarying levels of complexity in transcription factor binding motifs.Computational predictions provide insights into the biology of TAL effector target sitesRecognition of cis-regulatory elements with vombat.Systems biology in the context of big data and networks.Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data.CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) dataCis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curvesDiscovering motifs in ranked lists of DNA sequences.Improved benchmarks for computational motif discovery.Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.A feature-based approach to modeling protein-DNA interactionsThe word landscape of the non-coding segments of the Arabidopsis thaliana genome.Fast motif recognition via application of statistical thresholdsUnifying generative and discriminative learning principles.Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis.Metamotifs--a generative model for building families of nucleotide position weight matrices.Motif-guided sparse decomposition of gene expression data for regulatory module identification.Nucleosome rotational setting is associated with transcriptional regulation in promoters of tissue-specific human genesVisualization and exploration of conserved regulatory modules using ReXSpecies 2Absence of a simple code: how transcription factors read the genomeA survey of motif discovery methods in an integrated frameworkThe next generation of transcription factor binding site predictionEffective automated feature construction and selection for classification of biological sequences.Sequence information gain based motif analysisAn affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system.A new approach to bias correction in RNA-SeqSequence dependence of isothermal DNA amplification via EXPARPOIMs: positional oligomer importance matrices--understanding support vector machine-based signal detectors.Position weight matrix, gibbs sampler, and the associated significance tests in motif characterization and predictionProtein-DNA binding: complexities and multi-protein codes.Cis-regulatory elements and human evolutionDeciphering the protein-RNA recognition code: combining large-scale quantitative methods with structural biology.Automated incorporation of pairwise dependency in transcription factor binding site prediction using dinucleotide weight tensors.Mapping specificity landscapes of RNA-protein interactions by high throughput sequencing.
P2860
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P2860
Identification of transcription factor binding sites with variable-order Bayesian networks
description
2005 nî lūn-bûn
@nan
2005 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Identification of transcriptio ...... riable-order Bayesian networks
@ast
Identification of transcriptio ...... riable-order Bayesian networks
@en
Identification of transcriptio ...... riable-order Bayesian networks
@nl
type
label
Identification of transcriptio ...... riable-order Bayesian networks
@ast
Identification of transcriptio ...... riable-order Bayesian networks
@en
Identification of transcriptio ...... riable-order Bayesian networks
@nl
prefLabel
Identification of transcriptio ...... riable-order Bayesian networks
@ast
Identification of transcriptio ...... riable-order Bayesian networks
@en
Identification of transcriptio ...... riable-order Bayesian networks
@nl
P2093
P3181
P356
P1433
P1476
Identification of transcriptio ...... riable-order Bayesian networks
@en
P2093
P304
P3181
P356
10.1093/BIOINFORMATICS/BTI410
P407
P577
2005-03-29T00:00:00Z