SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models - Wikidata - awgldk - TriplyDB

SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

http://www.wikidata.org/entity/Q28472510

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Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Practically useful: what the Rosetta protein modeling suite can do for you A benchmark testing ground for integrating homology modeling and protein docking.Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27 Protein-protein complex structure predictions by multimeric threading and template recombination Benchmarking and analysis of protein docking performance in Rosetta v3.2.A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13-19 Mechanism of polyubiquitin chain recognition by the human ubiquitin conjugating enzyme Ube2g2 Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin.Human germline antibody gene segments encode polyspecific antibodies.Analysis and modeling of the variable region of camelid single-domain antibodies.Peptides designed to spatially depict the Epstein-Barr virus major virion glycoprotein gp350 neutralization epitope elicit antibodies that block virus-neutralizing antibody 72A1 interaction with the native gp350 molecule Antibody specific epitope prediction-emergence of a new paradigm A Framework to Simplify Combined Sampling Strategies in Rosetta IBC's 22nd Annual Antibody Engineering and 9th Annual Antibody Therapeutics International Conferences and the 2011 Annual Meeting of The Antibody Society, December 5-8, 2011, San Diego, CA.Virtual interactomics of proteins from biochemical standpoint.Computer-aided antibody design.Application of asymmetric statistical potentials to antibody-protein docking Computational design of an epitope-specific Keap1 binding antibody using hotspot residues grafting and CDR loop swapping.Low-resolution structural modeling of protein interactome.BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35.A flexible docking approach for prediction of T cell receptor-peptide-MHC complexes.Computational prediction and analysis of the DR6-NAPP interaction.T-dependent B cell responses to Plasmodium induce antibodies that form a high-avidity multivalent complex with the circumsporozoite protein.Structure-based cross-docking analysis of antibody-antigen interactions.Improving B-cell epitope prediction and its application to global antibody-antigen docking.Automated antibody structure prediction using Accelrys tools: results and best practices.Antibody engineering and therapeutics, The Annual Meeting of the Antibody Society: December 8-12, 2013, Huntington Beach, CA Structure-based non-canonical amino acid design to covalently crosslink an antibody-antigen complex.Increasing stability of antibody via antibody engineering: stability engineering on an anti-hVEGF.Antibody i-Patch prediction of the antibody binding site improves rigid local antibody-antigen docking.Web-accessible molecular modeling with Rosetta: The Rosetta Online Server that Includes Everyone (ROSIE).Modeling and docking of antibody structures with Rosetta.Computationally-driven identification of antibody epitopes.How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data.Accurate Structure Prediction of CDR H3 Loops Enabled by a Novel Structure-Based C-Terminal Constraint.Computational Tools for Aiding Rational Antibody Design.Construction and Characterization of a Humanized Anti-Epstein-Barr Virus gp350 Antibody with Neutralizing Activity in Cell Culture.

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SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

http://www.wikidata.org/entity/Q28472510

description

2010 nî lūn-bûn

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2010 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունվարին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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SnugDock: paratope structural ...... rs in antibody homology models

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PLOS Computational Biology

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SnugDock: paratope structural ...... rs in antibody homology models

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Aroop Sircar

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P2860

Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking

Improved side-chain modeling for protein-protein docking

Native protein sequences are close to optimal for their structures

Refined crystal structure of the influenza virus N9 neuraminidase-NC41 Fab complex

Dissecting NGF interactions with TrkA and p75 receptors by structural and functional studies of an anti-NGF neutralizing antibody

Three-dimensional structures of the free and the antigen-complexed Fab from monoclonal anti-lysozyme antibody D44.1

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

H3-rules: identification of CDR-H3 structures in antibodies

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

CAPRI: a Critical Assessment of PRedicted Interactions

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1

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Jeffrey J. Gray

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