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Improving ancient DNA read mapping against modern reference genomes

Improving ancient DNA read mapping against modern reference genomes

http://www.wikidata.org/entity/Q28727226

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Mitochondrial phylogenomics of modern and ancient equids Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans Ancient genomics Adaptable probabilistic mapping of short reads using position specific scoring matrices.Ancient DNA reveals elephant birds and kiwi are sister taxa and clarifies ratite bird evolution Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes Toward high-resolution population genomics using archaeological samples A whole mitochondria analysis of the Tyrolean Iceman's leather provides insights into the animal sources of Copper Age clothing Evolutionary Relationships among Extinct and Extant Sloths: The Evidence of Mitogenomes and Retroviruses Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas Iron Age and Anglo-Saxon genomes from East England reveal British migration history POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans Successful Recovery of Nuclear Protein-Coding Genes from Small Insects in Museums Using Illumina Sequencing Pros and cons of methylation-based enrichment methods for ancient DNA Improving access to endogenous DNA in ancient bones and teeth Paging through history: parchment as a reservoir of ancient DNA for next generation sequencing Impacts of low coverage depths and post-mortem DNA damage on variant calling: a simulation study MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters Mammuthus Population Dynamics in Late Pleistocene North America: Divergence, Phylogeography, and Introgression A European Mitochondrial Haplotype Identified in Ancient Phoenician Remains from Carthage, North Africa Late Pleistocene Australian Marsupial DNA Clarifies the Affinities of Extinct Megafaunal Kangaroos and Wallabies FPSAC: fast phylogenetic scaffolding of ancient contigs.Genome data from a sixteenth century pig illuminate modern breed relationships gargammel: a sequence simulator for ancient DNA Genetic evidence of African slavery at the beginning of the trans-Atlantic slave trade.Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years.SNPest: a probabilistic graphical model for estimating genotypes.Complete Mitochondrial Genomes of New Zealand's First Dogs.False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.Shotgun microbial profiling of fossil remains.A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins: using the latest advances in ancient genomics, the mitochondrial genome sequence of a 400,000-year-old hominin has been deciphered.Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX.Impact of enrichment conditions on cross-species capture of fresh and degraded DNA.Reconstructing ancient genomes and epigenomes.Mitochondrial Genetic Diversity of Eurasian Red Squirrels (Sciurus vulgaris) from Denmark.Postglacial viability and colonization in North America's ice-free corridor.Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing Experimental conditions improving in-solution target enrichment for ancient DNA.

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Improving ancient DNA read mapping against modern reference genomes

http://www.wikidata.org/entity/Q28727226

description

2012 nî lūn-bûn

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2012 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2012 թվականի մայիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Improving ancient DNA read mapping against modern reference genomes

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Improving ancient DNA read mapping against modern reference genomes

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Improving ancient DNA read mapping against modern reference genomes

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type

label

Improving ancient DNA read mapping against modern reference genomes

@ast

Improving ancient DNA read mapping against modern reference genomes

@en

Improving ancient DNA read mapping against modern reference genomes

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prefLabel

Improving ancient DNA read mapping against modern reference genomes

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Improving ancient DNA read mapping against modern reference genomes

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Improving ancient DNA read mapping against modern reference genomes

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Improving ancient DNA read mapping against modern reference genomes

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Khaled A S Al-Rasheid

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Ancient human genome sequence of an extinct Palaeo-Eskimo

A Draft Sequence of the Neandertal Genome

Genome sequence, comparative analysis, and population genetics of the domestic horse

Genetic history of an archaic hominin group from Denisova Cave in Siberia

The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

A draft genome of Yersinia pestis from victims of the Black Death

Single molecule sequencing with a HeliScope genetic analysis system

Expression profiling of microRNAs by deep sequencing

Ancient biomolecules from deep ice cores reveal a forested southern Greenland

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Ludovic Orlando

Aurelien Ginolhac

Mikkel Schubert

John F Thompson

Eske Willerslev

Stinus Lindgreen

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2012-05-10T00:00:00Z

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