Detection of functional DNA motifs via statistical over-representation - Wikidata - awgldk - TriplyDB

Detection of functional DNA motifs via statistical over-representation

Detection of functional DNA motifs via statistical over-representation

http://www.wikidata.org/entity/Q28775981

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer IFNβ-dependent increases in STAT1, STAT2, and IRF9 mediate resistance to viruses and DNA damage Tbx20 regulates a genetic program essential to adult mouse cardiomyocyte function JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update DoOP: Databases of Orthologous Promoters, collections of clusters of orthologous upstream sequences from chordates and plants oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.Genome-wide gene expression in response to parasitoid attack in Drosophila Measuring similarities between transcription factor binding sites Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway A sustained dietary change increases epigenetic variation in isogenic mice Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.Death-associated protein 3 is overexpressed in human thyroid oncocytic tumours High-resolution mapping and characterization of open chromatin across the genome Multiple independent evolutionary solutions to core histone gene regulation Genome-level identification of targets of Hox protein Ultrabithorax in Drosophila: novel mechanisms for target selection Identification of genomic features in environmentally induced epigenetic transgenerational inherited sperm epimutations mRNA levels in control rat liver display strain-specific, hereditary, and AHR-dependent components Characterization of three growth hormone-responsive transcription factors preferentially expressed in adult female liver Structural basis of a unique interferon-β signaling axis mediated via the receptor IFNAR1 A20-binding inhibitor of NF-κB (ABIN1) controls Toll-like receptor-mediated CCAAT/enhancer-binding protein β activation and protects from inflammatory disease GREAM: A Web Server to Short-List Potentially Important Genomic Repeat Elements Based on Over-/Under-Representation in Specific Chromosomal Locations, Such as the Gene Neighborhoods, within or across 17 Mammalian Species MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function Acute myeloid leukemia-associated Mkl1 (Mrtf-a) is a key regulator of mammary gland function RNA-Seq analysis of chikungunya virus infection and identification of granzyme A as a major promoter of arthritic inflammation A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces.Improved predictions of transcription factor binding sites using physicochemical features of DNA.Identification of novel genes selectively expressed in the follicle-associated epithelium from the meta-analysis of transcriptomics data from multiple mouse cell and tissue populations.Alteration in basal and depolarization induced transcriptional network in iPSC derived neurons from Timothy syndrome.Seqinspector: position-based navigation through the ChIP-seq data landscape to identify gene expression regulators.A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1 SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.Prediction and validation of protein-protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach Alignments anchored on genomic landmarks can aid in the identification of regulatory elements.Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions

P2860

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P2860

Detection of functional DNA motifs via statistical over-representation

http://www.wikidata.org/entity/Q28775981

description

2004 nî lūn-bûn

@nan

2004 թուականին հրատարակուած գիտական յօդուած

@hyw

2004 թվականին հրատարակված գիտական հոդված

@hy

2004年の論文

@ja

2004年論文

@yue

2004年論文

@zh-hant

2004年論文

@zh-hk

2004年論文

@zh-mo

2004年論文

@zh-tw

2004年论文

@wuu

name

Detection of functional DNA motifs via statistical over-representation

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Detection of functional DNA motifs via statistical over-representation

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type

label

Detection of functional DNA motifs via statistical over-representation

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Detection of functional DNA motifs via statistical over-representation

@en

prefLabel

Detection of functional DNA motifs via statistical over-representation

@ast

Detection of functional DNA motifs via statistical over-representation

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Nucleic Acids Research

P1476

Detection of functional DNA motifs via statistical over-representation

@en

P2093

Jiang-Fan Chen

http://www.w3.org/2001/XMLSchema#string

Liqun Yu

http://www.w3.org/2001/XMLSchema#string

Ulla Hansen

http://www.w3.org/2001/XMLSchema#string

Yutao Fu

http://www.w3.org/2001/XMLSchema#string

Zhiping Weng

http://www.w3.org/2001/XMLSchema#string

P2860

Muscle differentiation is antagonized by SOX15, a new member of the SOX protein family

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.

The UCSC Genome Browser Database

DNA binding sites: representation and discovery

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

TRANSFAC: an integrated system for gene expression regulation.

Information content of binding sites on nucleotide sequences

Myogenic stem cell function is impaired in mice lacking the forkhead/winged helix protein MNF

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1372-81

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scholarly article

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1765739

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10.1093/NAR/GKH299

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4

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32

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2004-01-01T00:00:00Z

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6686616

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14988425

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390287

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