A travel guide to Cytoscape plugins. - Wikidata - awgldk - TriplyDB

A travel guide to Cytoscape plugins.

A travel guide to Cytoscape plugins.

http://www.wikidata.org/entity/Q29788355

about

Haem-activated promiscuous targeting of artemisinin in Plasmodium falciparum Gene Prioritization for Imaging Genetics Studies Using Gene Ontology and a Stratified False Discovery Rate Approach Profound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciens Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future Integrative approaches for finding modular structure in biological networks Learning from Co-expression Networks: Possibilities and Challenges Protein-protein interaction networks: probing disease mechanisms using model systems Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery The MI bundle: enabling network and structural biology in genome visualization tools.4DGenome: a comprehensive database of chromatin interactions.Genetic Architecture of Atherosclerosis in Mice: A Systems Genetics Analysis of Common Inbred Strains The Swine Plasma Metabolome Chronicles "Many Days" Biological Timing and Functions Linked to Growth MONGKIE: an integrated tool for network analysis and visualization for multi-omics data.Open source libraries and frameworks for biological data visualisation: a guide for developers.Analyzing and interpreting genome data at the network level with ConsensusPathDB CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria PhosphoSitePlus, 2014: mutations, PTMs and recalibrations Quantitative phosphoproteomics reveals new roles for the protein phosphatase PP6 in mitotic cells A second-generation protein-protein interaction network of Helicobacter pylori An extended network of genomic maintenance in the archaeon Pyrococcus abyssi highlights unexpected associations between eucaryotic homologs The use of functional chemical-protein associations to identify multi-pathway renoprotectants Visualization of network target crosstalk optimizes drug synergism in myocardial ischemia Systems level analysis and identification of pathways and networks associated with liver fibrosis Involvement of Polycomb Repressive Complex 2 in Maturation of Induced Pluripotent Stem Cells during Reprogramming of Mouse and Human Fibroblasts A Protein Complex Map of Trypanosoma brucei Phosphoproteome Analysis of Invasion and Metastasis-Related Factors in Pancreatic Cancer Cells Role of Hepatic-Specific Transcription Factors and Polycomb Repressive Complex 2 during Induction of Fibroblasts to Hepatic Fate The last enzyme of the de novo purine synthesis pathway 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (ATIC) plays a central role in insulin signaling and the Golgi/endosomes protein network Structural elucidation of estrus urinary lipocalin protein (EULP) and evaluating binding affinity with pheromones using molecular docking and fluorescence study Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats Quantitative proteomics analysis of an ethanol- and a lactate-producing mutant strain of Synechocystis sp. PCC6803 Clinical interpretation of CNVs with cross-species phenotype data Making proteomics data accessible and reusable: current state of proteomics databases and repositories Visualisation of BioPAX Networks using BioLayout Express (3D)Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq

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P2860

A travel guide to Cytoscape plugins.

http://www.wikidata.org/entity/Q29788355

description

2012 nî lūn-bûn

@nan

2012 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի նոյեմբերին հրատարակված գիտական հոդված

@hy

2012年の論文

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2012年論文

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2012年論文

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2012年論文

@zh-hk

2012年論文

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2012年論文

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2012年论文

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name

A travel guide to Cytoscape plugins.

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Johannes Ruscheinski

http://www.w3.org/2001/XMLSchema#string

Keiichiro Ono

http://www.w3.org/2001/XMLSchema#string

Michael E Smoot

http://www.w3.org/2001/XMLSchema#string

Peng-Liang Wang

http://www.w3.org/2001/XMLSchema#string

Rintaro Saito

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Samad Lotia

http://www.w3.org/2001/XMLSchema#string

Trey Ideker

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P2860

WikiPathways: pathway editing for the people

An automated method for finding molecular complexes in large protein interaction networks

Gene ontology: tool for the unification of biology

KEGG: kyoto encyclopedia of genes and genomes

Cytoscape: a software environment for integrated models of biomolecular interaction networks

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks

Pathway Commons, a web resource for biological pathway data

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1069-1076

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660804

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10.1038/NMETH.2212

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11

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9

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Alexander R. Pico

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2012-11-06T00:00:00Z

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232967109

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