A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.
about
Structural basis of chaperone-subunit complex recognition by the type 1 pilus assembly platform FimD.CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resourcesOMPdb: a database of {beta}-barrel outer membrane proteins from Gram-negative bacteriaMembrane protein prediction methodsEvaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction methodA Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteinsTMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteinsTMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins.TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins.TRAMPLE: the transmembrane protein labelling environment.Prediction of beta-barrel membrane proteins by searching for restricted domains.The Omp85 family of proteins is essential for outer membrane biogenesis in mitochondria and bacteria.Predicting Beta Barrel Transmembrane Proteins Using HMMs.PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins.Charge asymmetry in the proteins of the outer membrane.BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.TMBB-DB: a transmembrane β-barrel proteome database.Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions.A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteinsMutational analyses reveal overall topology and functional regions of NilB, a bacterial outer membrane protein required for host association in a model of animal-microbe mutualismBOCTOPUS: improved topology prediction of transmembrane β barrel proteins.Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information.HHomp--prediction and classification of outer membrane proteins.A consensus algorithm to screen genomes for novel families of transmembrane beta barrel proteins.TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences.Evidence for a novel domain of bacterial outer membrane ushers.Predicting transmembrane beta-barrels and interstrand residue interactions from sequence.PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteinsA new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins.Analysing the outer membrane subproteome of Methylococcus capsulatus (Bath) using proteomics and novel biocomputing tools.Asymmetric amino acid compositions of transmembrane beta-strands.PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins.Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.Predicting transmembrane beta-barrels in proteomes.Functional characterization of a second porin isoform in Drosophila melanogaster. DmPorin2 forms voltage-independent cation-selective pores.Analysis of dihedral angle preferences for alanine and glycine residues in alpha and beta transmembrane regions.Alternative approach to protein structure prediction based on sequential similarity of physical propertiesiMembrane: homology-based membrane-insertion of proteins.CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.Computational Approaches for Revealing the Structure of Membrane Transporters: Case Study on Bilitranslocase.
P2860
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P2860
A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins.
description
2002 nî lūn-bûn
@nan
2002 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2002 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2002年の論文
@ja
2002年論文
@yue
2002年論文
@zh-hant
2002年論文
@zh-hk
2002年論文
@zh-mo
2002年論文
@zh-tw
2002年论文
@wuu
name
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@ast
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@en
type
label
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@ast
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@en
prefLabel
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@ast
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@en
P356
P1433
P1476
A sequence-profile-based HMM f ...... beta barrel membrane proteins.
@en
P2093
Pier Luigi Martelli
Piero Fariselli
P304
P356
10.1093/BIOINFORMATICS/18.SUPPL_1.S46
P407
P478
18 Suppl 1
P577
2002-01-01T00:00:00Z