Environment-dependent residue contact energies for proteins.
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Amino acid empirical contact energy definitions for fold recognition in the space of contact mapsDisulfide recognition in an optimized threading potential.Can correct protein models be identified?A new generation of statistical potentials for proteins.Delaunay-based nonlocal interactions are sufficient and accurate in protein fold recognition.SVR_CAF: an integrated score function for detecting native protein structures among decoys.A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structuresAb initio protein structure prediction using pathway models.Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their displayInformation-theoretic analysis of the reference state in contact potentials used for protein structure prediction.New statistical potential for quality assessment of protein models and a survey of energy functionsNCACO-score: an effective main-chain dependent scoring function for structure modelingSpectrum of disease-causing mutations in protein secondary structuresIdentification of deleterious non-synonymous single nucleotide polymorphisms using sequence-derived information.From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimationProtein threading by learning.Driving forces for transmembrane alpha-helix oligomerization.DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking.Fold prediction of helical proteins using torsion angle dynamics and predicted restraints.The dependence of all-atom statistical potentials on structural training database.Characteristics of protein residue-residue contacts and their application in contact predictionROTAS: a rotamer-dependent, atomic statistical potential for assessment and prediction of protein structuresPacking helices in proteins by global optimization of a potential energy function.Reduced C(beta) statistical potentials can outperform all-atom potentials in decoy identification.Coarse-grained models for simulations of multiprotein complexes: application to ubiquitin binding.On the binding affinity of macromolecular interactions: daring to ask why proteins interact.Perceptron learning of pairwise contact energies for proteins incorporating the amino acid environment.Inferring ideal amino acid interaction forms from statistical protein contact potentials.Amino acid interaction preferences in proteins.An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.Probing the disordered domain of the nuclear pore complex through coarse-grained molecular dynamics simulations.Pairwise contact energy statistical potentials can help to find probability of point mutations.Model quality assessment for membrane proteins.Search for identical octapeptides in unrelated proteins: Structural plasticity revisited.Distance-dependent atomic knowledge-based force in protein fold recognition.Contact prediction is hardest for the most informative contacts, but improves with the incorporation of contact potentials.
P2860
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P2860
Environment-dependent residue contact energies for proteins.
description
2000 nî lūn-bûn
@nan
2000 թուականի Մարտին հրատարակուած գիտական յօդուած
@hyw
2000 թվականի մարտին հրատարակված գիտական հոդված
@hy
2000年の論文
@ja
2000年論文
@yue
2000年論文
@zh-hant
2000年論文
@zh-hk
2000年論文
@zh-mo
2000年論文
@zh-tw
2000年论文
@wuu
name
Environment-dependent residue contact energies for proteins.
@ast
Environment-dependent residue contact energies for proteins.
@en
type
label
Environment-dependent residue contact energies for proteins.
@ast
Environment-dependent residue contact energies for proteins.
@en
prefLabel
Environment-dependent residue contact energies for proteins.
@ast
Environment-dependent residue contact energies for proteins.
@en
P2860
P356
P1476
Environment-dependent residue contact energies for proteins.
@en
P2860
P304
P356
10.1073/PNAS.040573597
P407
P577
2000-03-01T00:00:00Z