Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. - Wikidata - awgldk - TriplyDB

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

http://www.wikidata.org/entity/Q30374720

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Annotation error in public databases: misannotation of molecular function in enzyme superfamilies The Enzyme Function Initiative.Glutathione transferases are structural and functional outliers in the thioredoxin fold Phylogenetic-Derived Insights into the Evolution of Sialylation in Eukaryotes: Comprehensive Analysis of Vertebrate β-Galactoside α2,3/6-Sialyltransferases (ST3Gal and ST6Gal)Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution Methods for biological data integration: perspectives and challenges SPASM and twitch domains in S-adenosylmethionine (SAM) radical enzymes A pluralistic account of homology: adapting the models to the data Ultrahigh-throughput discovery of promiscuous enzymes by picodroplet functional metagenomics.Annotating Enzymes of Uncertain Function: The Deacylation of d -Amino Acids by Members of the Amidohydrolase Superfamily ,Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis ,Discovery and Structure Determination of the Orphan Enzyme Isoxanthopterin Deaminase,Functional Identification and Structure Determination of Two Novel Prolidases from cog1228 in the Amidohydrolase Superfamily,Rescue of the Orphan Enzyme Isoguanine Deaminase Structural and Mechanistic Characterization of l -Histidinol Phosphate Phosphatase from the Polymerase and Histidinol Phosphatase Family of Proteins Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily Functional Classification of Immune Regulatory Proteins Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily Structure and Catalytic Mechanism of LigI: Insight into the Amidohydrolase Enzymes of cog3618 and Lignin Degradation Deamination of 6-Aminodeoxyfutalosine in Menaquinone Biosynthesis by Distantly Related Enzymes Prospecting for Unannotated Enzymes: Discovery of a 3′,5′-Nucleotide Bisphosphate Phosphatase within the Amidohydrolase Superfamily A comprehensive analysis of the geranylgeranylglyceryl phosphate synthase enzyme family identifies novel members and reveals mechanisms of substrate specificity and quaternary structure organization Ligand cluster-based protein network and ePlatton, a multi-target ligand finder Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae Enzyme Function Initiative-Enzyme Similarity Tool (EFI-EST): A web tool for generating protein sequence similarity networks SmCL3, a gastrodermal cysteine protease of the human blood fluke Schistosoma mansoni A global comparison of the human and T. brucei degradomes gives insights about possible parasite drug targets Discovery of function in the enolase superfamily: D-mannonate and d-gluconate dehydratases in the D-mannonate dehydratase subgroup Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks Structural characterization and function determination of a nonspecific carboxylate esterase from the amidohydrolase superfamily with a promiscuous ability to hydrolyze methylphosphonate esters Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine VISTA, a novel mouse Ig superfamily ligand that negatively regulates T cell responses Molecular Diversity of Terpene Synthases in the Liverwort Marchantia polymorpha Potential role of glutathione in evolution of thiol-based redox signaling sites in proteins Biological network exploration with Cytoscape 3 Stalking the fourth domain in metagenomic data: searching for, discovering, and interpreting novel, deep branches in marker gene phylogenetic trees Substrate, product, and cofactor: The extraordinarily flexible relationship between the CDE superfamily and heme Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses Clustering and visualizing similarity networks of membrane proteins.Protein-fold recognition using an improved single-source K diverse shortest paths algorithm.

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P2860

Using sequence similarity networks for visualization of relationships across diverse protein superfamilies.

http://www.wikidata.org/entity/Q30374720

description

2009 nî lūn-bûn

@nan

2009 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年論文

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2009年論文

@zh-hant

2009年論文

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2009年論文

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2009年論文

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2009年论文

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name

Using sequence similarity netw ...... diverse protein superfamilies.

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Using sequence similarity netw ...... diverse protein superfamilies.

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type

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Using sequence similarity netw ...... diverse protein superfamilies.

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Using sequence similarity netw ...... diverse protein superfamilies.

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Using sequence similarity netw ...... diverse protein superfamilies.

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Using sequence similarity netw ...... diverse protein superfamilies.

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Using sequence similarity netw ...... diverse protein superfamilies.

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Holly J Atkinson

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John H Morris

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P2860

Dendroscope: An interactive viewer for large phylogenetic trees

Tools for integrated sequence-structure analysis with UCSF Chimera.

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems

Gene ontology: tool for the unification of biology

The protein kinase complement of the human genome

Cytoscape: a software environment for integrated models of biomolecular interaction networks

Molecular tinkering of G protein-coupled receptors: an evolutionary success

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

The Pfam protein families database

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scholarly article

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10.1371/JOURNAL.PONE.0004345

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Thomas E Ferrin

Patricia Babbitt

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