Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics. - Wikidata - awgldk - TriplyDB

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

http://www.wikidata.org/entity/Q30477869

about

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Strategies for metagenomic-guided whole-community proteomics of complex microbial environments Proteogenomics: concepts, applications and computational strategies Proteomic characterization of novel alternative splice variant proteins in human epidermal growth factor receptor 2/neu-induced breast cancers The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia.Navigating through metaproteomics data: a logbook of database searching.Next Generation Sequencing Data and Proteogenomics.Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models.Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets.The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.Brain proteomics of Anopheles gambiae.OryzaPG-DB: rice proteome database based on shotgun proteogenomics.Template proteogenomics: sequencing whole proteins using an imperfect database.The discovery of novel protein-coding features in mouse genome based on mass spectrometry data.Identification of alternatively spliced transcripts using a proteomic informatics approach A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF Protein identification using customized protein sequence databases derived from RNA-Seq data.Proteogenomics to discover the full coding content of genomes: a computational perspective.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework "De-novo" amino acid sequence elucidation of protein G'e by combined "top-down" and "bottom-up" mass spectrometry.Improving gene annotation using peptide mass spectrometry PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.A method for identifying discriminative isoform-specific peptides for clinical proteomics application.Inference and validation of protein identifications.Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani.Overcoming the dynamic range problem in mass spectrometry-based shotgun proteomics.A mouse plasma peptide atlas as a resource for disease proteomics.The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation.Discovery and revision of Arabidopsis genes by proteogenomics Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer.

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P2860

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

http://www.wikidata.org/entity/Q30477869

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2006 nî lūn-bûn

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2006年の論文

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Novel gene and gene model dete ...... frame analysis in proteomics.

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Novel gene and gene model dete ...... frame analysis in proteomics.

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Novel gene and gene model dete ...... frame analysis in proteomics.

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Novel gene and gene model dete ...... frame analysis in proteomics.

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Novel gene and gene model dete ...... frame analysis in proteomics.

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Damian Fermin

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P2860

The Universal Protein Resource (UniProt)

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

Basic local alignment search tool

Probability-based protein identification by searching sequence databases using mass spectrometry data

The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability.

PROSITE: a documented database using patterns and profiles as motif descriptors

Mass spectrometry allows direct identification of proteins in large genomes

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

The International Protein Index: an integrated database for proteomics experiments

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