Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
about
Microsatellites in Pursuit of Microbial Genome EvolutionFamily Wide Molecular Adaptations to Underground Life in African Mole-Rats Revealed by Phylogenomic Analysis.Hologenome analysis of two marine sponges with different microbiomesCombined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptomeOrthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomicsTissue-Specific Venom Composition and Differential Gene Expression in Sea AnemonesHost Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species.Sequencing and de novo assembly of a Dahlia hybrid cultivar transcriptomeCorset: enabling differential gene expression analysis for de novo assembled transcriptomes.A systems level analysis reveals transcriptomic and proteomic complexity in Ixodes ricinus midgut and salivary glands during early attachment and feeding.Systems biology studies of adult paragonimus lung flukes facilitate the identification of immunodominant parasite antigensThe transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes.Comparative transcriptomics in East African cichlids reveals sex- and species-specific expression and new candidates for sex differentiation in fishes.Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets.VTBuilder: a tool for the assembly of multi isoform transcriptomes.Genome-wide transcriptomic and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms in the aluminum-accumulating species buckwheat (Fagopyrum tataricum).Transcriptome analysis of northern elephant seal (Mirounga angustirostris) muscle tissue provides a novel molecular resource and physiological insights.Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana.Identification and characterization of alternative splicing in parasitic nematode transcriptomes.Tissue- and time-dependent transcription in Ixodes ricinus salivary glands and midguts when blood feeding on the vertebrate hostThe transcriptome of Utricularia vulgaris, a rootless plant with minimalist genome, reveals extreme alternative splicing and only moderate sequence similarity with Utricularia gibba.Optimal assembly strategies of transcriptome related to ploidies of eukaryotic organismsGenomic sequencing and microsatellite marker development for Boswellia papyrifera, an economically important but threatened tree native to dry tropical forests.Transcriptome and venom proteome of the box jellyfish Chironex fleckeri.JAFFA: High sensitivity transcriptome-focused fusion gene detection.ClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAsAnalysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues.Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation.Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois)Thermal reactionomes reveal divergent responses to thermal extremes in warm and cool-climate ant species.Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets.Comparative analysis of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas [L.] Lam) and its wild ancestor (Ipomoea trifida [Kunth] G. Don)Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.An efficient field and laboratory workflow for plant phylotranscriptomic projectsDiscovery and characterization of Alu repeat sequences via precise local read assembly.Informed kmer selection for de novo transcriptome assemblyBioinformatics Approach in Plant Genomic Research.
P2860
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P2860
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
description
2013 nî lūn-bûn
@nan
2013 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@ast
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@en
type
label
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@ast
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@en
prefLabel
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@ast
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@en
P2860
P356
P1433
P1476
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
@en
P2093
P2860
P2888
P356
10.1186/1471-2164-14-328
P407
P577
2013-05-14T00:00:00Z
P5875
P6179
1002432932