An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
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Cnidaria: fast, reference-free clustering of raw and assembled genome and transcriptome NGS dataThe Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data.The Importance of Bacterial Culture to Food Microbiology in the Age of GenomicsA clade of Listeria monocytogenes serotype 4b variant strains linked to recent listeriosis outbreaks associated with produce from a defined geographic region in the US.Concordance and discordance of sequence survey methods for molecular epidemiologyWhole Genome Sequence Analysis Using JSpecies Tool Establishes Clonal Relationships between Listeria monocytogenes Strains from Epidemiologically Unrelated Listeriosis OutbreaksAssessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States.Whole genome sequencing analyses of Listeria monocytogenes that persisted in a milkshake machine for a year and caused illnesses in Washington State.Recovery and Growth Potential of Listeria monocytogenes in Temperature Abused Milkshakes Prepared from Naturally Contaminated Ice Cream Linked to a Listeriosis OutbreakWhole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks.Listeria monocytogenes in Stone Fruits Linked to a Multistate Outbreak: Enumeration of Cells and Whole-Genome Sequencing.Singleton Sequence Type 382, an Emerging Clonal Group of Listeria monocytogenes Associated with Three Multistate Outbreaks Linked to Contaminated Stone Fruit, Caramel Apples, and Leafy Green Salad.A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens.A Primer on Infectious Disease Bacterial GenomicsWhole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes associated with an outbreak linked to cheese, United States, 2013.NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.Prevalence and Level of Listeria monocytogenes in Ice Cream Linked to a Listeriosis Outbreak in the United States.Outbreak of unusual Salmonella enterica serovar Typhimurium monophasic variant 1,4 [5],12:i:-, Italy, June 2013 to September 2014.FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny.Microbial sequence typing in the genomic era.Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:.Rise and fall of outbreak-specific clone inside endemic pulsotype of Salmonella 4,[5],12:i:-; insights from high-resolution molecular surveillance in Emilia-Romagna, Italy, 2012 to 2015.
P2860
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P2860
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
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2014 nî lūn-bûn
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2014 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2014年の論文
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2014年学术文章
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2014年学术文章
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2014年学术文章
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2014年学术文章
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2014年学术文章
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2014年學術文章
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name
An evaluation of alternative m ...... : a case study with Salmonella
@ast
An evaluation of alternative m ...... : a case study with Salmonella
@en
type
label
An evaluation of alternative m ...... : a case study with Salmonella
@ast
An evaluation of alternative m ...... : a case study with Salmonella
@en
prefLabel
An evaluation of alternative m ...... : a case study with Salmonella
@ast
An evaluation of alternative m ...... : a case study with Salmonella
@en
P2093
P2860
P356
P1433
P1476
An evaluation of alternative m ...... : a case study with Salmonella
@en
P2093
Andrea Ottesen
Errol Strain
James B Pettengill
Marc W Allard
P2860
P356
10.7717/PEERJ.620
P577
2014-10-14T00:00:00Z