A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation - Wikidata - awgldk - TriplyDB

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

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Translation of CircRNAs.Bayesian prediction of RNA translation from ribosome profiling DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo.Insights into the mechanisms of eukaryotic translation gained with ribosome profiling Plastid: nucleotide-resolution analysis of next-generation sequencing and genomics data Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish.Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals.Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.Ribonuclease selection for ribosome profiling.Identification of Small Novel Coding Sequences, a Proteogenomics Endeavor.Beyond the Triplet Code: Context Cues Transform Translation.Mining for Micropeptides.Small proteins encoded by unannotated ORFs are rising stars of the proteome, confirming shortcomings in genome annotations and current vision of an mRNA.RiboProfiling: a Bioconductor package for standard Ribo-seq pipeline processing.A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes Ribosome Footprint Profiling of Translation throughout the Genome.REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.Rethinking Unconventional Translation in Neurodegeneration.Conserved non-AUG uORFs revealed by a novel regression analysis of ribosome profiling data.Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.The functions and unique features of long intergenic non-coding RNA.Comparative ribosome profiling uncovers a dominant role for translational control in Toxoplasma gondii.GWIPS-viz: 2018 update.Genome-wide identification and differential analysis of translational initiation.A Comprehensive Analysis of Transcript-Supported De Novo Genes in Saccharomyces sensu stricto Yeasts.Methods for monitoring and measurement of protein translation in time and space.Non-AUG translation: a new start for protein synthesis in eukaryotes.Exploiting non-canonical translation to identify new targets for T cell-based cancer immunotherapy.Computational resources for ribosome profiling: from database to Web server and software.Catch me if you can: trapping scanning ribosomes in their footsteps.Illuminating translation with ribosome profiling spectra.The exon-intron gene structure upstream of the initiation codon predicts translation efficiency.RNA surveillance by the nuclear RNA exosome: mechanisms and significance.Recognition of the polycistronic nature of human genes is critical to understanding the genotype-phenotype relationship.De novo annotation and characterization of the translatome with ribosome profiling data.Small but Mighty: Functional Peptides Encoded by Small ORFs in Plants.Micropeptides Encoded in Transcripts Previously Identified as Long Noncoding RNAs: A New Chapter in Transcriptomics and Proteomics.Disruption of TWIST1 translation by 5' UTR variants in Saethre-Chotzen syndrome riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data

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A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation

http://www.wikidata.org/entity/Q31030361

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Direct detection of alternative open reading frames translation products in human significantly expands the proteome

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A novel form of DAP5 protein accumulates in apoptotic cells as a result of caspase cleavage and internal ribosome entry site-mediated translation

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

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Raktima Raychowdhury

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