Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study. - Wikidata - awgldk - TriplyDB

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study.

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study.

http://www.wikidata.org/entity/Q31033878

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A systematic analysis of eluted fraction of plasma post immunoaffinity depletion: implications in biomarker discovery The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions Deciphering the molecular nature of ovarian cancer biomarker CA125 Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments A high confidence, manually validated human blood plasma protein reference set Emerging Affinity-Based Proteomic Technologies for Large-Scale Plasma Profiling in Cardiovascular Disease.Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.MOPED enables discoveries through consistently processed proteomics data.Interest of major serum protein removal for Surface-Enhanced Laser Desorption/Ionization - Time Of Flight (SELDI-TOF) proteomic blood profiling Human body fluid proteome analysis.Sherlock Holmes and the proteome--a detective story.Serum albumin-associated peptides of patients with uterine endometrial cancer.Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome.EPO-KB: a searchable knowledge base of biomarker to protein links A mouse to human search for plasma proteome changes associated with pancreatic tumor development.An attempt to understand kidney's protein handling function by comparing plasma and urine proteomes Advanced proteomic technologies for cancer biomarker discovery.Novel association of APC with intermediate filaments identified using a new versatile APC antibody Creation of a federated database of blood proteins: a powerful new tool for finding and characterizing biomarkers in serum.Prostate cancer serum biomarker discovery through proteomic analysis of alpha-2 macroglobulin protein complexes.Sampling the N-terminal proteome of human blood.Data management and data integration in the HUPO plasma proteome project.Bench-to-bedside review: future novel diagnostics for sepsis - a systems biology approach.Characterisation of the circulating acellular proteome of healthy sheep using LC-MS/MS-based proteomics analysis of serum.Making Meaningful Clinical Use of Biomarkers Blood-based biomarkers of Alzheimer's disease: challenging but feasible Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes Towards proteome standards: the use of absolute quantitation in high-throughput biomarker discovery.A blood-based proteomic classifier for the molecular characterization of pulmonary nodules.Temporal profiling of the secretome during adipogenesis in humans Depletion of abundant plasma proteins and limitations of plasma proteomics.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.Oxidative protein folding and the Quiescin-sulfhydryl oxidase family of flavoproteins.Prioritization of biomarker targets in human umbilical cord blood: identification of proteins in infant blood serving as validated biomarkers in adults Plasma protein characteristics of long-term hemodialysis survivors Use of cervicovaginal fluid for the identification of biomarkers for pathologies of the female genital tract.Integrative proteomics and tissue microarray profiling indicate the association between overexpressed serum proteins and non-small cell lung cancer Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra.Systematic discovery of ectopic pregnancy serum biomarkers using 3-D protein profiling coupled with label-free quantitation.

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P2860

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study.

http://www.wikidata.org/entity/Q31033878

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Damian Fermin

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David J States

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David W Speicher

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Samir M Hanash

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Thomas W Blackwell

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P2860

An investigation into the human serum "interactome"

The human plasma proteome: a nonredundant list developed by combination of four separate sources

Improved prediction of signal peptides: SignalP 3.0

Global analysis of protein expression in yeast

Probability-based protein identification by searching sequence databases using mass spectrometry data

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

Mass spectrometry-based proteomics

A statistical model for identifying proteins by tandem mass spectrometry

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

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data collaboration