Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data.
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Ensemble Refinement of Protein Crystal Structures: Validation and ApplicationStructural improvement of unliganded simian immunodeficiency virus gp120 core by normal-mode-based X-ray crystallographic refinementComparative Normal Mode Analysis of the Dynamics of DENV and ZIKV CapsidsIdentifying essential pairwise interactions in elastic network model using the alpha shape theory.Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin IIOptimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions.Predicting Real-Valued Protein Residue Fluctuation Using FlexPred.All-atom modeling of anisotropic atomic fluctuations in protein crystal structures.Structural features that predict real-value fluctuations of globular proteinsEvaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.Application of elastic network models to proteins in the crystalline state.Protein structural variation in computational models and crystallographic data.Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions.FlexOracle: predicting flexible hinges by identification of stable domains.Using entropy maximization to understand the determinants of structural dynamics beyond native contact topologyNormal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Describing protein conformational ensembles: beyond static snapshots.Are different stoichiometries feasible for complexes between lymphotoxin-alpha and tumor necrosis factor receptor 1?Models with energy penalty on interresidue rotation address insufficiencies of conventional elastic network modelsSpecific non-local interactions are not necessary for recovering native protein dynamics.Normal mode refinement of anisotropic thermal parameters for a supramolecular complex at 3.42-A crystallographic resolution.Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh.Simulation and Theory of Antibody Binding to Crowded Antigen-Covered Surfaces.Elastic Network Models are Robust to Variations in FormalismiGNM 2.0: the Gaussian network model database for biomolecular structural dynamics.Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environmentApplication of normal-mode refinement to X-ray crystal structures at the lower resolution limitAll-atom contact model for understanding protein dynamics from crystallographic B-factorsComputational methods for predicting sites of functionally important dynamics.Coarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectivesGlobal dynamics of proteins: bridging between structure and function.Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework.Large scale rigidity-based flexibility analysis of biomolecules.Dealing with structural variability in molecular replacement and crystallographic refinement through normal-mode analysis.Probing the folded state and mechanical unfolding pathways of T4 lysozyme using all-atom and coarse-grained molecular simulation.Anharmonic normal mode analysis of elastic network model improves the modeling of atomic fluctuations in protein crystal structures.Cutoff lensing: predicting catalytic sites in enzymes.Elastic network model of learned maintained contacts to predict protein motion.MinActionPath: maximum likelihood trajectory for large-scale structural transitions in a coarse-grained locally harmonic energy landscape
P2860
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P2860
Optimization and evaluation of a coarse-grained model of protein motion using x-ray crystal data.
description
2006 nî lūn-bûn
@nan
2006 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Optimization and evaluation of ...... tion using x-ray crystal data.
@ast
Optimization and evaluation of ...... tion using x-ray crystal data.
@en
type
label
Optimization and evaluation of ...... tion using x-ray crystal data.
@ast
Optimization and evaluation of ...... tion using x-ray crystal data.
@en
prefLabel
Optimization and evaluation of ...... tion using x-ray crystal data.
@ast
Optimization and evaluation of ...... tion using x-ray crystal data.
@en
P2093
P2860
P1433
P1476
Optimization and evaluation of ...... tion using x-ray crystal data.
@en
P2093
Dmitry A Kondrashov
George N Phillips
P2860
P304
P356
10.1529/BIOPHYSJ.106.085894
P407
P577
2006-08-04T00:00:00Z
P5875
P698
P818
q-bio/0604007