ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data - Wikidata - awgldk - TriplyDB

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data

http://www.wikidata.org/entity/Q31154589

about

Neuron-specific protein interactions of Drosophila CASK-β are revealed by mass spectrometry MIPS: curated databases and comprehensive secondary data resources in 2010 Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists A systematic proteomic study of irradiated DNA repair deficient Nbn-mice From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations Martini: using literature keywords to compare gene sets KEGG spider: interpretation of genomics data in the context of the global gene metabolic network COFECO: composite function annotation enriched by protein complex data.Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing.Functional and evolutionary correlates of gene constellations in the Drosophila melanogaster genome that deviate from the stereotypical gene architecture GARNET--gene set analysis with exploration of annotation relations ADGO 2.0: interpreting microarray data and list of genes using composite annotations.R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.The impact of focused Gene Ontology curation of specific mammalian systems Detecting phenotype-specific interactions between biological processes from microarray data and annotations.Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis.A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology.Insights into the trypanosome-host interactions revealed through transcriptomic analysis of parasitized tsetse fly salivary glands.Annotation concept synthesis and enrichment analysis: a logic-based approach to the interpretation of high-throughput experiments GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.A role for RNA post-transcriptional regulation in satellite cell activation SOX7 co-regulates Wnt/β-catenin signaling with Axin-2: both expressed at low levels in breast cancer.The Genetic Basis for Variation in Sensitivity to Lead Toxicity in Drosophila melanogaster Early cellular signaling responses to axonal injury.VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists.Mitochondrial-Nuclear Interactions Mediate Sex-Specific Transcriptional Profiles in Drosophila.Mining protein lists from proteomics studies: applications for drug discovery.BioProfiling.de: analytical web portal for high-throughput cell biology.The number of the genes in a functional category matters during rat liver regeneration after partial hepatectomy.A comparative study on endovascular treatment of (sub)acute critical limb ischemia: mechanical thrombectomy vs thrombolysis Human adipose tissue macrophages display activation of cancer-related pathways Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.CXC chemokine ligand 4 induces a unique transcriptome in monocyte-derived macrophages.Anti-oxidative stress response genes: bioinformatic analysis of their expression and relevance in multiple cancers.CCancer: a bird's eye view on gene lists reported in cancer-related studies.Cigarette smoking reprograms apical junctional complex molecular architecture in the human airway epithelium in vivo.Molecular characterization of tsetse's proboscis and its response to Trypanosoma congolense infection.Thyroid hormones alter the transcriptome of in vitro-produced bovine blastocysts.The role of Kupffer cells in rat liver regeneration revealed by cell-specific microarray analysis.

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P2860

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data

http://www.wikidata.org/entity/Q31154589

description

2008 nî lūn-bûn

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2008 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2008 թվականի մայիսին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

ProfCom: a web tool for profil ...... fied from high-throughput data

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ProfCom: a web tool for profil ...... fied from high-throughput data

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type

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ProfCom: a web tool for profil ...... fied from high-throughput data

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ProfCom: a web tool for profil ...... fied from high-throughput data

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ProfCom: a web tool for profil ...... fied from high-throughput data

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ProfCom: a web tool for profil ...... fied from high-throughput data

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Nucleic Acids Research

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ProfCom: a web tool for profil ...... fied from high-throughput data

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Alexey V Antonov

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Yu Wang

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P2860

Gene ontology: tool for the unification of biology

A systematic approach to infer biological relevance and biases of gene network structures.

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

Database resources of the National Center for Biotechnology Information

GOToolBox: functional analysis of gene datasets based on Gene Ontology

GoMiner: a resource for biological interpretation of genomic and proteomic data

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

WebGestalt: an integrated system for exploring gene sets in various biological contexts.

Database resources of the National Center for Biotechnology Information

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10.1093/NAR/GKN239

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36

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Hans-Werner Mewes

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