Automated protein subfamily identification and classification.
about
An assessment of substitution scores for protein profile-profile comparisonThe use of evolutionary patterns in protein annotationFunctional Classification of Immune Regulatory ProteinsIsofunctional Protein Subfamily Detection Using Data Integration and Spectral ClusteringThe PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classificationExploring the structure and function paradigm.HIPPI: highly accurate protein family classification with ensembles of HMMs.A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme function.The Rise and Fall of TRP-N, an Ancient Family of Mechanogated Ion Channels, in MetazoaUsing shifts in amino acid frequency and substitution rate to identify latent structural characters in base-excision repair enzymesProtein subfamily assignment using the Conserved Domain DatabaseCORAL: aligning conserved core regions across domain familiesEnsemble approach to predict specificity determinants: benchmarking and validationGeMMA: functional subfamily classification within superfamilies of predicted protein structural domains.The construction and use of log-odds substitution scores for multiple sequence alignment.Arabidopsis thaliana PGR7 encodes a conserved chloroplast protein that is necessary for efficient photosynthetic electron transport.Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets.Integrated pathway clusters with coherent biological themes for target prioritisationBiocuration in the structure-function linkage database: the anatomy of a superfamilyFast and automated functional classification with MED-SuMo: an application on purine-binding proteins.Multiple evidence for the role of an Ovate-like gene in determining fruit shape in pepper.Detection of viral sequence fragments of HIV-1 subfamilies yet unknownA comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives.SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction.Ortho2ExpressMatrix--a web server that interprets cross-species gene expression data by gene family informationExploiting structural classifications for function prediction: towards a domain grammar for protein function.Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signaturesObjective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue predictionBayesian classification of residues associated with protein functional divergence: Arf and Arf-like GTPases.A model-based information sharing protocol for profile Hidden Markov Models used for HIV-1 recombination detectionDetailed analysis of function divergence in a large and diverse domain superfamily: toward a refined protocol of function classificationLog-odds sequence logosHMM-ModE: implementation, benchmarking and validation with HMMER3.Ortholog identification in the presence of domain architecture rearrangement.Inference of functional properties from large-scale analysis of enzyme superfamilies.SPEER-SERVER: a web server for prediction of protein specificity determining sites.DASP3: identification of protein sequences belonging to functionally relevant groups.An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.Berkeley PHOG: PhyloFacts orthology group prediction web server
P2860
Q24631484-4E8CD31C-3B91-4874-8070-D7A250A7CE23Q27027251-5F4F64D0-1F3A-4C8F-B461-AD365861C089Q27677346-0FC03141-61DF-4C8E-B10A-B9E0F4BD5E15Q28552164-09D17B08-FF04-4B2D-8341-BDAAEAB140ACQ28681144-D548E7FE-4561-41BB-9D72-CD28E536137AQ30369983-07F71D8F-8659-47C3-B7A0-720F9148C2B4Q30398441-6E0F4F50-978B-4814-943D-27D72E526B2CQ30417435-8A8643BD-4447-4807-A076-40C386466697Q30656959-643A97F8-9AAC-4EE2-B9C1-62CB0F5E6B4BQ31036870-F30E3BC4-A365-4705-8649-1211B613D0C8Q33384940-BA5F27E7-8734-45A7-8ECD-5D3383EB1A91Q33453075-3C823C00-DF80-44DF-9436-35D09C0567EDQ33477661-72F71A4A-38B5-45CE-A504-D48E80FEEDB8Q33633731-18AC669A-556F-4109-8AA0-9E253ABE4AD1Q33640089-935252AC-D685-4BF4-B5B0-0A22C2294D11Q33640140-B385C0D6-87B1-4BE5-8493-4909AA10838AQ33662531-8DBFE276-7029-4D49-A6FA-6C7EB7187066Q33740163-D6AE774F-65F1-4EEE-91A9-FA03DAA1C848Q33787500-8B81651B-8C06-42FB-AFCB-501458C7B27DQ33839028-3DCE81DF-B7ED-425B-8D30-5BFDEFA10FEDQ33845361-107F0309-A71E-46EC-9906-88981A56F0BFQ33868290-0BA7EDC5-8EEA-4846-A0BB-2E32100829B3Q33869871-8ACE5A0C-C120-4476-8318-8CBEDF33D3B5Q33957835-7102A1CE-5300-4563-B795-1DD43D72B8FBQ34039734-0789258A-BA5B-4256-9036-83666196FD99Q34061411-0C56C8F7-1A73-4C9F-A884-CB0289867A11Q34315125-DCDA7A53-8612-4187-BB11-DDAB7B18D7BAQ34401467-A057D83B-CBBE-46AF-83C2-E4E9EE72A8FFQ34414704-1A395AF1-B524-4338-ABDC-1FBC40D2ADEFQ34447982-4B3471CA-5D14-4EB4-A601-285649B8EA2EQ34502193-E9E0FE12-4E6B-4EDB-B2E7-AD68DD1BB275Q34505130-44AA8DE3-DFAD-4444-983D-7D0459ECF998Q35055258-019D736F-C179-452F-9B30-5A939E63ABC4Q35215270-BCD711F2-8ABD-4A4A-BB57-F7ACD67395BCQ35226472-E054F0A8-6BB3-4E07-B42F-C98DFBEDF33AQ35643675-5A19706A-4DD8-483C-B5B0-3A879E15DA4FQ36088556-68E3FFEE-D983-422B-A07F-1AC031B2FCCCQ36190134-70ABC826-3513-4859-BDD9-BA36253E899DQ36276889-A6F1AFF7-A86B-4D52-8457-A370082417DEQ37245580-46263F87-1322-46AD-8372-E85B100C784A
P2860
Automated protein subfamily identification and classification.
description
2007 nî lūn-bûn
@nan
2007 թուականի Օգոստոսին հրատարակուած գիտական յօդուած
@hyw
2007 թվականի օգոստոսին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Automated protein subfamily identification and classification.
@ast
Automated protein subfamily identification and classification.
@en
Automated protein subfamily identification and classification.
@nl
type
label
Automated protein subfamily identification and classification.
@ast
Automated protein subfamily identification and classification.
@en
Automated protein subfamily identification and classification.
@nl
prefLabel
Automated protein subfamily identification and classification.
@ast
Automated protein subfamily identification and classification.
@en
Automated protein subfamily identification and classification.
@nl
P2093
P2860
P1476
Automated protein subfamily identification and classification.
@en
P2093
Duncan P Brown
Kimmen Sjölander
Nandini Krishnamurthy
P2860
P356
10.1371/JOURNAL.PCBI.0030160
P577
2007-08-01T00:00:00Z