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Accurate detection and genotyping of SNPs utilizing population sequencing data

Accurate detection and genotyping of SNPs utilizing population sequencing data

http://www.wikidata.org/entity/Q33530810

about

Combining family- and population-based imputation data for association analysis of rare and common variants in large pedigrees Pleiotropy analysis of quantitative traits at gene level by multivariate functional linear models Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data Whole-genome single-nucleotide polymorphism (SNP) marker discovery and association analysis with the eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) content in Larimichthys crocea.LDx: estimation of linkage disequilibrium from high-throughput pooled resequencing data.PyroHMMsnp: an SNP caller for Ion Torrent and 454 sequencing data.VarBin, a novel method for classifying true and false positive variants in NGS data.Construction and analysis of high-density linkage map using high-throughput sequencing data Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations.RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data.Preparing DNA libraries for multiplexed paired-end deep sequencing for Illumina GA sequencers.Discovery of rare mutations in populations: TILLING by sequencing.A statistical method for the detection of variants from next-generation resequencing of DNA pools.A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.Estimation of allele frequency and association mapping using next-generation sequencing data Rare-variant association testing for sequencing data with the sequence kernel association test.Inference of population mutation rate and detection of segregating sites from next-generation sequence data.A novel application of pattern recognition for accurate SNP and indel discovery from high-throughput data: targeted resequencing of the glucocorticoid receptor co-chaperone FKBP5 in a Caucasian population A cross-sample statistical model for SNP detection in short-read sequencing data.Multi-sample pooling and illumina genome analyzer sequencing methods to determine gene sequence variation for database development Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples.Functional linear models for association analysis of quantitative traits.Identification of gene mutations in autosomal dominant polycystic kidney disease through targeted resequencing.Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population.Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data.Determination of RET Sequence Variation in an MEN2 Unaffected Cohort Using Multiple-Sample Pooling and Next-Generation Sequencing A new approach for detecting low-level mutations in next-generation sequence data.Generalized functional linear models for gene-based case-control association studies Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).Identification and analysis of genome-wide SNPs provide insight into signatures of selection and domestication in channel catfish (Ictalurus punctatus).Efficiency and power as a function of sequence coverage, SNP array density, and imputation.Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Replication strategies for rare variant complex trait association studies via next-generation sequencing.Association studies for next-generation sequencing.Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level.Estimating the information value of polymorphic sites using pooled sequences.Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study.Sequencing of high-complexity DNA pools for identification of nucleotide and structural variants in regions associated with complex traits.NGS technologies for analyzing germplasm diversity in genebanks.

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Accurate detection and genotyping of SNPs utilizing population sequencing data

http://www.wikidata.org/entity/Q33530810

description

2010 nî lūn-bûn

@nan

2010 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի փետրվարին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

Accurate detection and genotyping of SNPs utilizing population sequencing data

@ast

Accurate detection and genotyping of SNPs utilizing population sequencing data

@en

Accurate detection and genotyping of SNPs utilizing population sequencing data.

@nl

type

label

Accurate detection and genotyping of SNPs utilizing population sequencing data

@ast

Accurate detection and genotyping of SNPs utilizing population sequencing data

@en

Accurate detection and genotyping of SNPs utilizing population sequencing data.

@nl

prefLabel

Accurate detection and genotyping of SNPs utilizing population sequencing data

@ast

Accurate detection and genotyping of SNPs utilizing population sequencing data

@en

Accurate detection and genotyping of SNPs utilizing population sequencing data.

@nl

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Genome Research

P1476

Accurate detection and genotyping of SNPs utilizing population sequencing data

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Kelly A Frazer

http://www.w3.org/2001/XMLSchema#string

Ryan Tewhey

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Sarah S Murray

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Vikas Bansal

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P2860

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

The diploid genome sequence of an Asian individual

The complete genome of an individual by massively parallel DNA sequencing

Multiple Rare Alleles Contribute to Low Plasma Levels of HDL Cholesterol

Rare independent mutations in renal salt handling genes contribute to blood pressure variation

Accurate whole human genome sequencing using reversible terminator chemistry

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

Rare variants of IFIH1, a gene implicated in antiviral responses, protect against type 1 diabetes

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537-545

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scholarly article

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10.1101/GR.100040.109

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4

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20

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Nicholas J Schork

Olivier Harismendy

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2010-02-11T00:00:00Z

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41424730

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20150320

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