A signal-noise model for significance analysis of ChIP-seq with negative control. - Wikidata - awgldk - TriplyDB

A signal-noise model for significance analysis of ChIP-seq with negative control.

A signal-noise model for significance analysis of ChIP-seq with negative control.

http://www.wikidata.org/entity/Q33550016

about

PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse Evaluation of algorithm performance in ChIP-seq peak detection Practical guidelines for the comprehensive analysis of ChIP-seq data A transcriptional repressor co-regulatory network governing androgen response in prostate cancers Ago1 Interacts with RNA polymerase II and binds to the promoters of actively transcribed genes in human cancer cells Computational characterization of modes of transcriptional regulation of nuclear receptor genes Features that define the best ChIP-seq peak calling algorithms CHANCE: comprehensive software for quality control and validation of ChIP-seq data DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates.HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.groHMM: a computational tool for identifying unannotated and cell type-specific transcription units from global run-on sequencing data.SCell: integrated analysis of single-cell RNA-seq data Identifying peaks in *-seq data using shape information.An integrated functional genomics approach identifies the regulatory network directed by brachyury (T) in chordoma.Q&A: ChIP-seq technologies and the study of gene regulation Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells.A short survey of computational analysis methods in analysing ChIP-seq data.Methods for cancer epigenome analysis.ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.GLUT3 is induced during epithelial-mesenchymal transition and promotes tumor cell proliferation in non-small cell lung cancer.ChIP-Seq: technical considerations for obtaining high-quality data NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression.Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.Bivalent-like chromatin markers are predictive for transcription start site distribution in human The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding.Cell-type specificity of ChIP-predicted transcription factor binding sites Normalization of ChIP-seq data with control.A diffusion model for the coordination of DNA replication in Schizosaccharomyces pombe.Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types.CENTDIST: discovery of co-associated factors by motif distribution.High-throughput sequencing reveals the disruption of methylation of imprinted gene in induced pluripotent stem cells AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription.Identification of the transcription factor ZEB1 as a central component of the adipogenic gene regulatory network.The ensembl regulatory build Is this the right normalization? A diagnostic tool for ChIP-seq normalization.

P2860

Q21133922-A552E9CE-0FDD-49B0-85A1-368C92DE8A2F Q21136324-1F94B87F-D4E9-4B1F-A476-B230637668FA Q21563477-10469255-D18C-4DEE-9411-93DC3499949C Q24317244-1C68D4B0-5F01-4418-A116-D180E99C197A Q28533855-35E8F64A-C3F0-43AE-8300-86736C6DB168 Q28539796-1E572B33-7CDC-4F43-A044-432769E6418C Q30387991-F1635C21-D3B6-4945-97A9-329E00EF9714 Q30573512-60FF5927-A838-4801-94F1-9C2DDCFA2FE0 Q30625844-9561E425-205F-4C19-B792-2FF28B99C0B2 Q30647275-3E374B51-589F-46C6-A2CE-2EA6275051A9 Q30666001-C033221D-C678-4FDC-8B67-F951A6A3330D Q30828757-AAD215E5-4D8E-433F-ACF4-101F134DECC1 Q30837378-5BBC2F51-89CF-410D-ADA8-5041A3DC1978 Q30980309-E8CD179C-328F-49B1-BA9A-4772A8A801D7 Q31092312-762F9012-3257-471F-B555-E9F2AB3DA64B Q31107778-803AFBA9-F668-4C03-8C2A-719108F6066B Q33274526-5206BF87-01FD-4042-BA7C-5297CE02C789 Q33596661-7CDBAFD4-6C16-4447-A69C-0DF09C0A9A27 Q33751432-3CDF9C24-30A6-4FD8-B043-105EFF9DF349 Q33791229-736CA7A9-0891-4303-8248-B5D42507E144 Q33812542-9E400FC3-B975-47A8-A499-75D2F304BF45 Q33874869-2C2B9796-E16C-4C30-B8AC-E06BCBDB23D7 Q33970447-C938DC0F-0571-42CF-AA76-916A17246E72 Q34003440-B675C083-884D-4586-AEC7-EB07F2C99086 Q34024936-CFDE9F9B-19DF-4BE9-B2A6-226FC1503073 Q34029662-F4002B4C-F355-47FC-A340-7E634D585393 Q34083278-D8B2C6EB-B054-4D08-ABD1-BB1B2737925F Q34327987-EF6E7D7D-35D2-4D58-BCD7-8D11D0FF61A0 Q34349554-A80255C8-5A21-472E-A8BF-4ED0EE00CE30 Q34365955-26CFF0F8-2DAB-4E68-BD96-E31C438A3D4E Q34376050-399980F7-5698-4D49-AF57-FC459DFEDB2A Q34507364-9C25BBB6-617F-4F02-A6E8-3AB17CEE4636 Q34723952-2B271DA5-7B93-4B9A-AC25-8FCB71022506 Q34998845-EF27F033-80AD-4284-B4F9-EA29767555FC Q35075636-49D3D4B7-9BEE-450D-9C5A-0D4DB0DA8072 Q35079288-7F66290C-3400-4C66-BEC4-78D5A5BC9A54 Q35161945-E561E139-4023-4814-9C5D-4D4562F75258 Q35176549-21FCAF9D-760B-4B82-A931-4EBB8D1D7EB0 Q35531112-11AE2C6E-6343-4832-A1D4-DC0A3F369316 Q35625871-376F8F57-E779-4D58-96EB-6592FFDDE044

P2860

A signal-noise model for significance analysis of ChIP-seq with negative control.

http://www.wikidata.org/entity/Q33550016

description

2010 nî lūn-bûn

@nan

2010 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2010年の論文

@ja

2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

A signal-noise model for significance analysis of ChIP-seq with negative control.

@ast

A signal-noise model for significance analysis of ChIP-seq with negative control.

@en

A signal-noise model for significance analysis of ChIP-seq with negative control.

@nl

type

label

A signal-noise model for significance analysis of ChIP-seq with negative control.

@ast

A signal-noise model for significance analysis of ChIP-seq with negative control.

@en

A signal-noise model for significance analysis of ChIP-seq with negative control.

@nl

prefLabel

A signal-noise model for significance analysis of ChIP-seq with negative control.

@ast

A signal-noise model for significance analysis of ChIP-seq with negative control.

@en

A signal-noise model for significance analysis of ChIP-seq with negative control.

@nl

P1433

Q33550016-86CFCEA1-761B-4666-89BC-4A675D86DAF0

P1476

Q33550016-72A5AE74-B7C1-46D6-A7FB-8793DA604C8D

P2093

Q33550016-0D15E9C1-006A-4652-8901-E7118D9047BF

Q33550016-1B9E4376-5BF6-40E3-BD6D-4B4BAA983509

Q33550016-25A3B3E5-9BE7-45D4-B0B6-5086543D9DDA

Q33550016-29B43B22-85EF-48C6-99E8-CA6E9B69C5FE

Q33550016-56F283E9-7891-4456-BF68-C1C07474BB87

Q33550016-68E02165-2B1F-49EC-8944-B35951A69F96

Q33550016-82911E46-B1D0-45C4-8CCA-3ED99FEAFF43

Q33550016-CAE1B466-3351-4669-81FB-C1D3FA89DD66

P2860

Q33550016-1141DFF5-F9FB-454A-AAFF-194D8B23E84C

Q33550016-17EDC517-36C3-4CD9-ADAB-FE8A05E7A262

Q33550016-1D14E4F1-45A2-4793-8EEB-3AA7246FB8A8

Q33550016-24AD25DC-6999-43B6-99D3-94E3C127284C

Q33550016-35BAB639-6759-4C93-B45D-3F719593C823

Q33550016-3782CE9D-8C67-4D6A-BC40-509782A3C8C0

Q33550016-657EEC9F-3007-47F0-9F83-D53C9D6EE7C8

Q33550016-6C3FB91B-B51F-4E7E-94CE-6E1093205F9F

Q33550016-711C5747-15B6-4206-AFC5-7B1D86C2FED3

Q33550016-921ADBAC-8754-4612-9210-5CC45397AFF8

P304

Q33550016-DFE45166-C43B-422A-B74B-5B03F584CC58

P31

Q33550016-B67823AB-557F-4487-ADB2-8FF871C7662F

P356

Q33550016-C2730F00-2A75-4ACD-A450-0763DED16C55

P407

Q33550016-0FA8E73F-7FEE-4ADC-A033-20C859224CD4

P433

Q33550016-CCBA980C-BF67-44F8-86CB-2B84984C750B

P478

Q33550016-FCC69C48-527F-4B8F-AC33-8468CEAF1C9A

P577

Q33550016-74549A7B-5272-4655-9C4C-8820A76ABC74

P5875

Q33550016-75B90DD4-454E-486E-8DB7-B5D9C2A426EC

P698

Q33550016-CDDB0A58-192A-4CB7-A57A-EA2FD6EEEC73

P356

P1433

P1476

A signal-noise model for significance analysis of ChIP-seq with negative control.

@en

P2093

Chaopeng Ye

http://www.w3.org/2001/XMLSchema#string

Chia-Lin Wei

http://www.w3.org/2001/XMLSchema#string

Feng Lin

http://www.w3.org/2001/XMLSchema#string

Han Xu

http://www.w3.org/2001/XMLSchema#string

Jianpeng Sheng

http://www.w3.org/2001/XMLSchema#string

Lusy Handoko

http://www.w3.org/2001/XMLSchema#string

Wing-Kin Sung

http://www.w3.org/2001/XMLSchema#string

Xueliang Wei

http://www.w3.org/2001/XMLSchema#string

P2860

Model-based analysis of ChIP-Seq (MACS)

Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

High-resolution profiling of histone methylations in the human genome

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

Genome-wide mapping of in vivo protein-DNA interactions

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

A chromatin landmark and transcription initiation at most promoters in human cells

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

P304

1199-1204

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1093/BIOINFORMATICS/BTQ128

http://www.w3.org/2001/XMLSchema#string

P407

P433

9

http://www.w3.org/2001/XMLSchema#string

P478

26

http://www.w3.org/2001/XMLSchema#string

P577

2010-04-05T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

43049792

http://www.w3.org/2001/XMLSchema#string

P698

20371496

http://www.w3.org/2001/XMLSchema#string