ChIP-Seq: technical considerations for obtaining high-quality data
about
Single molecule and single cell epigenomics.Nanobodies and recombinant binders in cell biologyPAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyondExome-based analysis for RNA epigenome sequencing data.Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates.Correlating histone modification patterns with gene expression data during hematopoiesis.Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data.A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.HEPeak: an HMM-based exome peak-finding package for RNA epigenome sequencing data.Genetic assimilation: a review of its potential proximate causes and evolutionary consequences.A novel algorithm for calling mRNA m6A peaks by modeling biological variances in MeRIP-seq data.OccuPeak: ChIP-Seq peak calling based on internal background modellingH3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cellsTechnical considerations for functional sequencing assays.Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets.A comparison of control samples for ChIP-seq of histone modifications.H3K4 mono- and di-methyltransferase MLL4 is required for enhancer activation during cell differentiation.Multiplex epitope mapping using bacterial surface display reveals both linear and conformational epitopes.Optimization of transcription factor binding map accuracy utilizing knockout-mouse models.Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information"Non-canonical protein-DNA interactions identified by ChIP are not artifacts": response.Widespread misinterpretable ChIP-seq bias in yeast.High-throughput sequencing reveals the disruption of methylation of imprinted gene in induced pluripotent stem cellsAn ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.Transcription of Nrdp1 by the androgen receptor is regulated by nuclear filamin A in prostate cancerStandardizing chromatin research: a simple and universal method for ChIP-seq.Picking ChIP-seq peak detectors for analyzing chromatin modification experimentsTranslational research in infectious disease: current paradigms and challenges ahead.metagene Profiles Analyses Reveal Regulatory Element's Factor-Specific Recruitment Patterns.Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development.Genome-Wide Epigenetic Studies in Human Disease: A Primer on -Omic TechnologiesCapture of associated targets on chromatin links long-distance chromatin looping to transcriptional coordinationHighly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins.A lesson learned from the H3.3K27M mutation found in pediatric glioma: a new approach to the study of the function of histone modifications in vivo?SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation.Chromatin signatures of active enhancers.Identifying and mitigating bias in next-generation sequencing methods for chromatin biology.Multi-layered global gene regulation in mouse embryonic stem cells.
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P2860
ChIP-Seq: technical considerations for obtaining high-quality data
description
2011 nî lūn-bûn
@nan
2011 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
ChIP-Seq: technical considerations for obtaining high-quality data
@ast
ChIP-Seq: technical considerations for obtaining high-quality data
@en
ChIP-Seq: technical considerations for obtaining high-quality data
@nl
type
label
ChIP-Seq: technical considerations for obtaining high-quality data
@ast
ChIP-Seq: technical considerations for obtaining high-quality data
@en
ChIP-Seq: technical considerations for obtaining high-quality data
@nl
prefLabel
ChIP-Seq: technical considerations for obtaining high-quality data
@ast
ChIP-Seq: technical considerations for obtaining high-quality data
@en
ChIP-Seq: technical considerations for obtaining high-quality data
@nl
P2860
P356
P1433
P1476
ChIP-Seq: technical considerations for obtaining high-quality data
@en
P2093
Benjamin L Kidder
P2860
P2888
P304
P356
10.1038/NI.2117
P407
P50
P577
2011-09-20T00:00:00Z
P5875
P6179
1020405136