Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays. - Wikidata - awgldk - TriplyDB

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

http://www.wikidata.org/entity/Q33607569

about

Visualizing multidimensional cancer genomics data Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges Structural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectives Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.Deciphering clonality in aneuploid breast tumors using SNP array and sequencing data.Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data.seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing.SegAnnDB: interactive Web-based genomic segmentation.A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data EZH2 alterations in follicular lymphoma: biological and clinical correlations.Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue.Phylogenetic analysis of metastatic progression in breast cancer using somatic mutations and copy number aberrations The AURORA pilot study for molecular screening of patients with advanced breast cancer-a study of the breast international group Randomised proof-of-concept phase II trial comparing targeted therapy based on tumour molecular profiling vs conventional therapy in patients with refractory cancer: results of the feasibility part of the SHIVA trial.Polarity gene alterations in pure invasive micropapillary carcinomas of the breast Model-integrated estimation of normal tissue contamination for cancer SNP allelic copy number data.Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data Chromosomal instability selects gene copy-number variants encoding core regulators of proliferation in ER+ breast cancer.Identity by descent mapping of founder mutations in cancer using high-resolution tumor SNP data.Absolute quantification of somatic DNA alterations in human cancer Comparison of methods to detect copy number alterations in cancer using simulated and real genotyping data.A general framework for analyzing tumor subclonality using SNP array and DNA sequencing data.Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis.Point Mutations in Exon 1B of APC Reveal Gastric Adenocarcinoma and Proximal Polyposis of the Stomach as a Familial Adenomatous Polyposis Variant.Genomic and transcriptional alterations in lung adenocarcinoma in relation to EGFR and KRAS mutation status.GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays Parent-specific copy number in paired tumor-normal studies using circular binary segmentation Impact of centralization on aCGH-based genomic profiles for precision medicine in oncology.Multi-omics analysis defines core genomic alterations in pheochromocytomas and paragangliomas.Molecular and genetic diversity in the metastatic process of melanoma The inactive X chromosome is epigenetically unstable and transcriptionally labile in breast cancer Copy-neutral loss of heterozygosity and chromosome gains and losses are frequent in gastrointestinal stromal tumors.Using the MCF10A/MCF10CA1a Breast Cancer Progression Cell Line Model to Investigate the Effect of Active, Mutant Forms of EGFR in Breast Cancer Development and Treatment Using Gefitinib.TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.Integrated genomics approach to identify biologically relevant alterations in fewer samples

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Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

http://www.wikidata.org/entity/Q33607569

description

2009 nî lūn-bûn

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2009 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Genome Alteration Print (GAP): ...... ofiles obtained by SNP arrays.

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Elodie Manié

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Emmanuel Barillot

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Guillem Rigaill

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Marc Henri Stern

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Tatiana Popova

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P2860

A statistical approach for array CGH data analysis

CARAT: a novel method for allelic detection of DNA copy number changes using high density oligonucleotide arrays.

Molecular definition of breast tumor heterogeneity

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

Genomic and transcriptional aberrations linked to breast cancer pathophysiologies

A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.

A faster circular binary segmentation algorithm for the analysis of array CGH data.

SiDCoN: a tool to aid scoring of DNA copy number changes in SNP chip data

High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.

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