Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data - Wikidata - awgldk - TriplyDB

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

http://www.wikidata.org/entity/Q34095905

about

Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Somatic mosaicism in the human genome Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges Long-term culture of genome-stable bipotent stem cells from adult human liver Signatures of post-zygotic structural genetic aberrations in the cells of histologically normal breast tissue that can predispose to sporadic breast cancer Frequent Somatic Mutation in Adult Intestinal Stem Cells Drives Neoplasia and Genetic Mosaicism during Aging Mosaic Loss of Chromosome Y in Blood Is Associated with Alzheimer Disease Notch pathway activation is essential for maintenance of stem-like cells in early tongue cancer Integrated genomic analyses identify frequent gene fusion events and VHL inactivation in gastrointestinal stromal tumors The genome landscape of the african green monkey kidney-derived vero cell line Comparative chemical genomics reveal that the spiroindolone antimalarial KAE609 (Cipargamin) is a P-type ATPase inhibitor Expression of a Chimeric Antigen Receptor in Multiple Leukocyte Lineages in Transgenic Mice Embryonic Lethality in Homozygous Human Her-2 Transgenic Mice Due to Disruption of the Pds5b Gene.Next-generation sequence analysis of cancer xenograft models.Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples.HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.SomatiCA: identifying, characterizing and quantifying somatic copy number aberrations from cancer genome sequencing data.Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data.CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.Inferring copy number and genotype in tumour exome data.SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data.Evaluation of somatic copy number estimation tools for whole-exome sequencing data.SAAS-CNV: A Joint Segmentation Approach on Aggregated and Allele Specific Signals for the Identification of Somatic Copy Number Alterations with Next-Generation Sequencing Data.Rapid and powerful detection of subtle allelic imbalance from exome sequencing data with hapLOHseq CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data nbCNV: a multi-constrained optimization model for discovering copy number variants in single-cell sequencing data sCNAphase: using haplotype resolved read depth to genotype somatic copy number alterations from low cellularity aneuploid tumors.Essential role for centromeric factors following p53 loss and oncogenic transformation Exome Sequencing of Oral Squamous Cell Carcinoma Reveals Molecular Subgroups and Novel Therapeutic Opportunities A global analysis of CNVs in swine using whole genome sequence data and association analysis with fatty acid composition and growth traits.SegAnnDB: interactive Web-based genomic segmentation.Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer.Extensive Copy Number Variation in Fermentation-Related Genes Among Saccharomyces cerevisiae Wine Strains.Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability.Fitness is strongly influenced by rare mutations of large effect in a microbial mutation accumulation experiment.Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer.Improving indel detection specificity of the Ion Torrent PGM benchtop sequencer

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Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data

http://www.wikidata.org/entity/Q34095905

description

2011 nî lūn-bûn

@nan

2011 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի դեկտեմբերին հրատարակված գիտական հոդված

@hy

2011年の論文

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2011年論文

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2011年論文

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2011年論文

@zh-hk

2011年論文

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2011年論文

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2011年论文

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name

Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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type

label

Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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prefLabel

Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

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Control-FREEC: a tool for asse ...... ext-generation sequencing data

@en

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Gudrun Schleiermacher

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Julie Cappo

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Kevin Bleakley

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Pierre Chiche

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Tatiana Popova

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Hallmarks of Cancer: The Next Generation

dbSNP: the NCBI database of genetic variation

Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays.

High-risk neuroblastoma tumors with 11q-deletion display a poor prognostic, chromosome instability phenotype with later onset.

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV

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423-425

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scholarly article

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10.1093/BIOINFORMATICS/BTR670

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3

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28

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Isabelle Janoueix-Lerosey

Valentina Boeva

Emmanuel Barillot

Olivier Delattre

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2011-12-06T00:00:00Z

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51866069

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22155870

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3268243

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