Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners.
about
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.rRNA promoter activity in the fast-growing bacterium Vibrio natriegensThe RNA polymerase "switch region" is a target for inhibitorsStructural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ SubunitThe RNA polymerase III transcription initiation factor TFIIIB participates in two steps of promoter opening.Mitochondrial transcription factor Mtf1 traps the unwound non-template strand to facilitate open complex formationFormation of the open complex by bacterial RNA polymerase--a quantitative modelPromoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.Formation of intermediate transcription initiation complexes at pfliD and pflgM by sigma(28) RNA polymerase.A Novel Spiro-Heterocyclic Compound Identified by the Silkworm Infection Model Inhibits Transcription in Staphylococcus aureusA mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent.Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit.Function of the bacterial TATAAT -10 element as single-stranded DNA during RNA polymerase isomerizationA "master" in base unpairing during isomerization of a promoter upon RNA polymerase binding.Identifying a core RNA polymerase surface critical for interactions with a sigma-like specificity factorRNA polymerases from Bacillus subtilis and Escherichia coli differ in recognition of regulatory signals in vitroStrong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.Interaction of RNA polymerase with forked DNA: evidence for two kinetically significant intermediates on the pathway to the final complex.Characterization of the cryptic AV3 promoter of ageratum yellow vein virus in prokaryotic and eukaryotic systems.Fluorescence resonance energy transfer analysis of escherichia coli RNA polymerase and polymerase-DNA complexes.A critical role of downstream RNA polymerase-promoter interactions in the formation of initiation complex.Next generation sequencing-based parallel analysis of melting kinetics of 4096 variants of a bacterial promoter.Promoter opening by sigma(54) and sigma(70) RNA polymerases: sigma factor-directed alterations in the mechanism and tightness of controlDissection of recognition determinants of Escherichia coli sigma32 suggests a composite -10 region with an 'extended -10' motif and a core -10 elementAnatomy of Escherichia coli sigma70 promoters.Base flipping in open complex formation at bacterial promotersRNA polymerase molecular beacon as tool for studies of RNA polymerase-promoter interactions.Mechanism of bacterial transcription initiation: RNA polymerase - promoter binding, isomerization to initiation-competent open complexes, and initiation of RNA synthesisFine structure of the promoter-sigma region 1.2 interaction.Advances in bacterial promoter recognition and its control by factors that do not bind DNA.Transcription initiation by mix and match elements: flexibility for polymerase binding to bacterial promotersAnalysis of RNA polymerase-promoter complex formation.Reduced capacity of alternative sigmas to melt promoters ensures stringent promoter recognition.Escherichia coli RNA polymerase contacts outside the -10 promoter element are not essential for promoter melting.Interaction of Escherichia coli RNA polymerase with artificial promoters, containing nonnucleotide spacers.A new basal promoter element recognized by RNA polymerase core enzymeTopography of lacUV5 initiation complexes.The -10 region is a key promoter specificity determinant for the Bacillus subtilis extracytoplasmic-function sigma factors sigma(X) and sigma(W)DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study.Marking the start site of RNA polymerase III transcription: the role of constraint, compaction and continuity of the transcribed DNA strand.
P2860
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P2860
Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners.
description
1999 nî lūn-bûn
@nan
1999 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
1999 թվականի մայիսին հրատարակված գիտական հոդված
@hy
1999年の論文
@ja
1999年論文
@yue
1999年論文
@zh-hant
1999年論文
@zh-hk
1999年論文
@zh-mo
1999年論文
@zh-tw
1999年论文
@wuu
name
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@ast
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@en
type
label
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@ast
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@en
prefLabel
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@ast
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@en
P356
P1433
P1476
Protein-nucleic acid interacti ...... tein and DNA binding partners.
@en
P2093
deHaseth PL
P304
P356
10.1021/BI990206G
P407
P577
1999-05-01T00:00:00Z