Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads - Wikidata - awgldk - TriplyDB

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

http://www.wikidata.org/entity/Q33755482

about

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.De novo sequencing, assembly and analysis of eight different transcriptomes from the Malayan pangolin Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems Transcriptomic analysis revealed the mechanism of oil dynamic accumulation during developing Siberian apricot (Prunus sibirica L.) seed kernels for the development of woody biodiesel.Transcriptome sequence and plasmid copy number analysis of the brewery isolate Pediococcus claussenii ATCC BAA-344 T during growth in beer Large-scale transcriptome analysis of retroelements in the migratory locust, Locusta migratoria Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels Developing the anemone Aiptasia as a tractable model for cnidarian-dinoflagellate symbiosis: the transcriptome of aposymbiotic A. pallida.Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.Evaluation of assembly strategies using RNA-seq data associated with grain development of wheat (Triticum aestivum L.).Evaluation of de novo transcriptome assemblies from RNA-Seq data.Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling.A new RNASeq-based reference transcriptome for sugar beet and its application in transcriptome-scale analysis of vernalization and gibberellin responses.Reduction in fecundity and shifts in cellular processes by a native virus on an invasive insect Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production.A pipeline for the de novo assembly of the Themira biloba (Sepsidae: Diptera) transcriptome using a multiple k-mer length approach.Why assembling plant genome sequences is so challenging Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus.Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).GC-content normalization for RNA-Seq data RNA-Seq and molecular docking reveal multi-level pesticide resistance in the bed bug.Overview of available methods for diverse RNA-Seq data analyses.A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing.Digital gene expression analysis based on integrated de novo transcriptome assembly of sweet potato [Ipomoea batatas (L.) Lam].Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette.Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.De novo sequencing and transcriptome analysis of the central nervous system of mollusc Lymnaea stagnalis by deep RNA sequencing SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.Lignin-modifying processes in the rhizosphere of arid land grasses.Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.De novo transcriptome assembly in chili pepper (Capsicum frutescens) to identify genes involved in the biosynthesis of capsaicinoids.Transcriptome profiling of the goose (Anser cygnoides) ovaries identify laying and broodiness phenotypes The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels.Genomic resources for multiple species in the Drosophila ananassae species group Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill.De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.Transcriptomics of salinity tolerance capacity in Arctic charr (Salvelinus alpinus): a comparison of gene expression profiles between divergent QTL genotypes.

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P2860

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

http://www.wikidata.org/entity/Q33755482

description

2010 nî lūn-bûn

@nan

2010 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի նոյեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

@yue

2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

@zh-mo

2010年論文

@zh-tw

2010年论文

@wuu

name

Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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type

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Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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prefLabel

Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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Rnnotator: an automated de nov ...... ne from stranded RNA-Seq reads

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Jeffrey Martin

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Michael Snyder

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Tao Zhang

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Vincent M Bruno

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Xiandong Meng

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Zhide Fang

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Zhong Wang

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P2860

Minimus: a fast, lightweight genome assembler

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

Optimization of de novo transcriptome assembly from next-generation sequencing data

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Fast and accurate short read alignment with Burrows-Wheeler transform

TopHat: discovering splice junctions with RNA-Seq

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

BLAT--the BLAST-like alignment tool

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

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