Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations
about
Revisiting hydrophobic mismatch with free energy simulation studies of transmembrane helix tilt and rotationCHARMM: the biomolecular simulation programComputer simulation of partitioning of ten pentapeptides Ace-WLXLL at the cyclohexane/water and phospholipid/water interfaces.Molecular dynamics simulations of biological membranes and membrane proteins using enhanced conformational sampling algorithmsKinetics of peptide folding in lipid membranesComputational modeling of membrane proteinsDynamics of Bcl-xL in water and membrane: molecular simulationsThe N-terminal amphipathic helix of the topological specificity factor MinE is associated with shaping membrane curvatureInsertion and assembly of membrane proteins via simulation.Enhanced Sampling of Coarse-Grained Transmembrane-Peptide Structure Formation from Hydrogen-Bond Replica Exchange.Interpretation of 2H-NMR experiments on the orientation of the transmembrane helix WALP23 by computer simulations.Coarse-Grained Models for Protein-Cell Membrane Interactions.Conformation and environment of channel-forming peptides: a simulation studyHelical distortion in tryptophan- and lysine-anchored membrane-spanning alpha-helices as a function of hydrophobic mismatch: a solid-state deuterium NMR investigation using the geometric analysis of labeled alanines methodSolid-state NMR characterization of conformational plasticity within the transmembrane domain of the influenza A M2 proton channel.Orientation and dynamics of peptides in membranes calculated from 2H-NMR datapH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path.Synaptotagmin's role in neurotransmitter release likely involves Ca(2+)-induced conformational transition.Membrane-induced structural rearrangement and identification of a novel membrane anchor in talin F2F3Determining peptide partitioning properties via computer simulation.A comparative study on the ability of two implicit solvent lipid models to predict transmembrane helix tilt angles.Computational design and experimental discovery of an antiestrogenic peptide derived from alpha-fetoproteinTransmembrane helix orientation and dynamics: insights from ensemble dynamics with solid-state NMR observables.Solid-state NMR ensemble dynamics as a mediator between experiment and simulationIn silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditionsSolid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit MembranesInteractions of amino acid side-chain analogs within membrane environments.Membrane assembly of simple helix homo-oligomers studied via molecular dynamics simulations.Efficient Exploration of Membrane-Associated Phenomena at Atomic Resolution.Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model.Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A.Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane.Effects of flanking loops on membrane insertion of transmembrane helices: a role for peptide conformational equilibrium.Orientation and dynamics of transmembrane peptides: the power of simple models.Coarse grained molecular dynamics simulations of transmembrane protein-lipid systems.Membrane insertion of fusion peptides from Ebola and Marburg viruses studied by replica-exchange molecular dynamics simulations.Size, motion, and function of the SecY translocon revealed by molecular dynamics simulations with virtual probes.Dynamic Heterogeneous Dielectric Generalized Born (DHDGB): An implicit membrane model with a dynamically varying bilayer thickness.Computational approaches for the design of peptides with anti-breast cancer properties.Modeling of peptides connecting the ligand-binding and transmembrane domains in the GluR2 glutamate receptor.
P2860
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P2860
Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations
description
2005 nî lūn-bûn
@nan
2005 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Interfacial folding and membra ...... molecular dynamics simulations
@ast
Interfacial folding and membra ...... molecular dynamics simulations
@en
type
label
Interfacial folding and membra ...... molecular dynamics simulations
@ast
Interfacial folding and membra ...... molecular dynamics simulations
@en
prefLabel
Interfacial folding and membra ...... molecular dynamics simulations
@ast
Interfacial folding and membra ...... molecular dynamics simulations
@en
P2860
P356
P1476
Interfacial folding and membra ...... molecular dynamics simulations
@en
P2093
Charles L Brooks
P2860
P304
P356
10.1073/PNAS.0408135102
P407
P50
P577
2005-04-28T00:00:00Z