pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. - Wikidata - awgldk - TriplyDB

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

http://www.wikidata.org/entity/Q33807674

about

High-throughput sequencing of immune repertoires in multiple sclerosis The analysis of clonal expansions in normal and autoimmune B cell repertoires Practical guidelines for B-cell receptor repertoire sequencing analysis VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.VDJviz: a versatile browser for immunogenomics data.ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data.A Model of Somatic Hypermutation Targeting in Mice Based on High-Throughput Ig Sequencing Data.CNS Aquaporin-4-specific B cells connect with multiple B-cell compartments in neuromyelitis optica spectrum disorder.Data on haplotype-supported immunoglobulin germline gene inference.B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes.Characterizing immune repertoires by high throughput sequencing: strategies and applications.Responsive population dynamics and wide seeding into the duodenal lamina propria of transglutaminase-2-specific plasma cells in celiac disease.Salmonella Infection Drives Promiscuous B Cell Activation Followed by Extrafollicular Affinity Maturation.sciReptor: analysis of single-cell level immunoglobulin repertoires.RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data.Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data.The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells.Deep sequencing and human antibody repertoire analysis.Exploration of immunoglobulin transcriptomes from mice immunized with three-finger toxins and phospholipases A2 from the Central American coral snake, Micrurus nigrocinctus.Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.Evaluation of a novel multi-immunogen vaccine strategy for targeting 4E10/10E8 neutralizing epitopes on HIV-1 gp41 membrane proximal external region.Overview of methodologies for T-cell receptor repertoire analysis.Studying Antibody Repertoires with Next-Generation Sequencing.Accurate immune repertoire sequencing reveals malaria infection driven antibody lineage diversification in young children.An atlas of B-cell clonal distribution in the human body.The cell menagerie: human immune profiling.Antibody-secreting plasma cells persist for decades in human intestine.Phylogenetic analysis of the human antibody repertoire reveals quantitative signatures of immune senescence and aging.Human Secretory IgM Emerges from Plasma Cells Clonally Related to Gut Memory B Cells and Targets Highly Diverse Commensals.Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis.Novel Method for High-Throughput Full-Length IGHV-D-J Sequencing of the Immune Repertoire from Bulk B-Cells with Single-Cell Resolution.Stereotyped antibody responses target posttranslationally modified gluten in celiac disease.The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales.VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads.

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pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

http://www.wikidata.org/entity/Q33807674

description

2014 nî lūn-bûn

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2014 թուականի Մարտին հրատարակուած գիտական յօդուած

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2014 թվականի մարտին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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pRESTO: a toolkit for processi ...... mphocyte receptor repertoires.

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pRESTO: a toolkit for processi ...... mphocyte receptor repertoires.

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Francois Vigneault

http://www.w3.org/2001/XMLSchema#string

Jason A Vander Heiden

http://www.w3.org/2001/XMLSchema#string

Joel N H Stern

http://www.w3.org/2001/XMLSchema#string

Kevin C O'Connor

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Mohamed Uduman

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Steven H Kleinstein

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Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data.

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations.

iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences.

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing.

Quantifying selection in high-throughput Immunoglobulin sequencing data sets

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

IgBLAST: an immunoglobulin variable domain sequence analysis tool

Genetic measurement of memory B-cell recall using antibody repertoire sequencing.

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements.

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1930-1932

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scholarly article

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10.1093/BIOINFORMATICS/BTU138

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13

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30

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David A. Hafler

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2014-03-10T00:00:00Z

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260717405

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24618469

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4071206

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