Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. - Wikidata - awgldk - TriplyDB

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

http://www.wikidata.org/entity/Q33830667

about

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts New metrics for comparative genomics Interplay of heritage and habitat in the distribution of bacterial signal transduction systems Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes.Advances in proteomics data analysis and display using an accurate mass and time tag approach.Integration of data for gene annotation using the BioMediator system.On the bottom of the deep blue sea.Classification and identification of bacteria using mass spectrometry-based proteomics.Knock-out of SO1377 gene, which encodes the member of a conserved hypothetical bacterial protein family COG2268, results in alteration of iron metabolism, increased spontaneous mutation and hydrogen peroxide sensitivity in Shewanella oneidensis MR-1 Genomes to aid in bioremediation of dry cleaning solvents, mothballs and more.The fuzzy border between a cell and an organelle.Generation and validation of a Shewanella oneidensis MR-1 clone set for protein expression and phage display Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.From complete genome sequence to 'complete' understanding?Complete genome sequence of the electricity-producing "Thermincola potens" strain JR.Proteome driven re-evaluation and functional annotation of the Streptococcus pyogenes SF370 genome Comparative omics-driven genome annotation refinement: application across Yersiniae Functional evolution of PLP-dependent enzymes based on active-site structural similarities Shewanella oneidensis MR-1 sensory box protein involved in aerobic and anoxic growth New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes.The Response of Shewanella oneidensis MR-1 to Cr(III) Toxicity Differs from that to Cr(VI).Respiratory nitrate ammonification by Shewanella oneidensis MR-1.Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.Current production and metal oxide reduction by Shewanella oneidensis MR-1 wild type and mutants.SQID: an intensity-incorporated protein identification algorithm for tandem mass spectrometry Development of BIATECH-54 standard mixtures for assessment of protein identification and relative expression.Practical applications of bacterial functional genomics.Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation.Exploring the roles of DNA methylation in the metal-reducing bacterium Shewanella oneidensis MR-1.Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.Proteogenomics and systems biology: quest for the ultimate missing parts.Quantifying protein function specificity in the gene ontology.A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions.Validating annotations for uncharacterized proteins in Shewanella oneidensis Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes.Impact of Solar Radiation on Gene Expression in Bacteria.Binding of Shewanella FadR to the fabA fatty acid biosynthetic gene: implications for contraction of the fad regulon.Genomic analysis of carbon source metabolism of Shewanella oneidensis MR-1: Predictions versus experiments.

P2860

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P2860

Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations.

http://www.wikidata.org/entity/Q33830667

description

2005 nî lūn-bûn

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2005 թուականի Յունուարին հրատարակուած գիտական յօդուած

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2005 թվականի հունվարին հրատարակված գիտական հոդված

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2005年の論文

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2005年論文

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2005年論文

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Global profiling of Shewanella ...... proved functional annotations.

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Global profiling of Shewanella ...... proved functional annotations.

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Global profiling of Shewanella ...... proved functional annotations.

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Carol S Giometti

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Charles E Lawrence

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Frank W Larimer

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Gordon A Anderson

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Grigoriy Pinchuk

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Gyorgy Babnigg

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James K Fredrickson

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P2860

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Survival of Shewanella oneidensis MR-1 after UV radiation exposure

Identifying protein function--a call for community action

The Pfam protein families database

Environmental genome shotgun sequencing of the Sargasso Sea

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

A genomic perspective on protein families

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

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2099-2104

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10.1073/PNAS.0409111102

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Margaret F Romine

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