A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.
about
The role of methylation in the intrinsic dynamics of B- and Z-DNAMolecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structuresClose encounters with DNAReintroducing Electrostatics into Macromolecular Crystallographic Refinement: Application to Neutron Crystallography and DNA HydrationSignificance of ligand tails for interaction with the minor groove of B-DNAConformations of an adenine bulge in a DNA octamer and its influence on DNA structure from molecular dynamics simulationsDirect observation of dipolar couplings between distant protons in weakly aligned nucleic acidsImportance of explicit salt ions for protein stability in molecular dynamics simulation.Triplex hydration: nanosecond molecular dynamics simulation of the solvated triplex formed by mixed sequences.Sequence-specific binding of counterions to B-DNA.Molecular dynamics simulations of DNA in solutions with different counter-ions.An NMR study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) showing hydration water molecules in the minor groove of a TpA step.Oxetane locked thymidine in the Dickerson-Drew dodecamer causes local base pairing distortions -- an NMR structure and hydration study.Bending and adaptability to proteins of the cAMP DNA-responsive element: molecular dynamics contrasted with NMRInduced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulationsEffect of a neutralized phosphate backbone on the minor groove of B-DNA: molecular dynamics simulation studies.Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results.Investigation and improvement of DNA cleavage models of polyamide + Cu(II) nuclease + OOH- ligands bound to DNARe-examination of the intrinsic, dynamic and hydration properties of phosphoramidate DNA.Hidden Markov models from molecular dynamics simulations on DNA.Structural equilibrium of DNA represented with different force fields.Hydration of the phosphate group in double-helical DNAChange in conformation by DNA-peptide association: molecular dynamics of the Hin-recombinase-hixL complexModeling helix-turn-helix protein-induced DNA bending with knowledge-based distance restraints.Competitive binding of Mg2+, Ca2+, Na+, and K+ ions to DNA in oriented DNA fibers: experimental and Monte Carlo simulation resultsMolecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.Structure and hydration of the DNA-human topoisomerase I covalent complex.Critical effect of the N2 amino group on structure, dynamics, and elasticity of DNA polypurine tracts.DNA polymorphism: a comparison of force fields for nucleic acids.Stability of the I-motif structure is related to the interactions between phosphodiester backbonesMolecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) stepsInduced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.DNA curvature and flexibility in vitro and in vivo.The ABCs of molecular dynamics simulations on B-DNA, circa 2012.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.On the molecular basis of uracil recognition in DNA: comparative study of T-A versus U-A structure, dynamics and open base pair kinetics.Influence of the N-terminal domain and divalent cations on self-association and DNA binding by the Saccharomyces cerevisiae TATA binding proteinUltrafast dynamics in DNA: "fraying" at the end of the helixThe pathway of oligomeric DNA melting investigated by molecular dynamics simulations
P2860
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P2860
A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.
description
1997 nî lūn-bûn
@nan
1997 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
1997 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
1997年の論文
@ja
1997年論文
@yue
1997年論文
@zh-hant
1997年論文
@zh-hk
1997年論文
@zh-mo
1997年論文
@zh-tw
1997年论文
@wuu
name
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@ast
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@en
type
label
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@ast
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@en
prefLabel
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@ast
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@en
P2093
P2860
P1433
P1476
A 5-nanosecond molecular dynam ...... cture, motions, and solvation.
@en
P2093
D L Beveridge
G Ravishanker
P2860
P304
P356
10.1016/S0006-3495(97)78263-8
P407
P577
1997-11-01T00:00:00Z