Hydration of the DNA bases is local - Wikidata - awgldk - TriplyDB

Hydration of the DNA bases is local

Hydration of the DNA bases is local

http://www.wikidata.org/entity/Q34047883

about

Similarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation study Solvent organization in an oligonucleotide crystal. The structure of d(GCGAATTCG)2 at atomic resolution The structure of the Dead ringer-DNA complex reveals how AT-rich interaction domains (ARIDs) recognize DNA.Atomic hydration potentials using a Monte Carlo Reference State (MCRS) for protein solvation modeling.Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures.Attractive hydration forces in DNA-dendrimer interactions on the nanometer scale A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations.Interfacial water as a "hydration fingerprint" in the noncognate complex of BamHI.Sequence-specific positions of water molecules at the interface between DNA and minor groove binders.The role of water structure in conformational changes of nucleic acids in ambient and high-pressure conditions.MeCP2 recognizes cytosine methylated tri-nucleotide and di-nucleotide sequences to tune transcription in the mammalian brain.A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.Hydration sites of unpaired RNA bases: a statistical analysis of the PDB structures.Effect of molecular crowding and ionic strength on the isothermal hybridization of oligonucleotides.An analysis of the relationship between hydration and protein-DNA interactions.Hydration of the phosphate group in double-helical DNA Sodium and chlorine ions as part of the DNA solvation shell.Internal dynamics in a DNA triple helix probed by (1)H-(15)N-NMR spectroscopy.Knowledge-based elastic potentials for docking drugs or proteins with nucleic acids DNA sequence representation by trianders and determinative degree of nucleotides.Dependence of nucleotide physical properties on their placement in codons and determinative degree.Ion and solvent density distributions around canonical B-DNA from integral equations.Cations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozyme Mutagenic effects induced by the attack of NO2 radical to the guanine-cytosine base pair.Effects of Acids, Bases, and Heteroatoms on Proximal Radial Distribution Functions for Proteins.Bioinformatic analysis of the protein/DNA interface.Structure and hydration of BamHI DNA recognition site: a molecular dynamics investigation.Hydration changes upon DNA folding studied by osmotic stress experiments Protein and drug interactions in the minor groove of DNA.On the competition between water, sodium ions, and spermine in binding to DNA: a molecular dynamics computer simulation study.Solvation of nucleosides in aqueous mixtures of organic solvents: relevance to DNA open basepairs.The effect of S-substitution at the O6-guanine site on the structure and dynamics of a DNA oligomer containing a G:T mismatch.Crystal studies of B-DNA: the answers and the questions.Molecular and biological constraints on ligand-binding affinity and specificity.Probing the role of interfacial waters in protein-DNA recognition using a hybrid implicit/explicit solvation model.Use of nucleic Acid analogs for the study of nucleic Acid interactions Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory Microhydration of 9-methylguanine:1-methylcytosine base pair and its radical anion: a density functional theory study.The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.A theoretical study of the cis-syn pyrimidine dimers in the gas phase and water cluster and a tautomer-bypass mechanism for the origin of UV-induced mutations.

P2860

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P2860

Hydration of the DNA bases is local

http://www.wikidata.org/entity/Q34047883

description

1995 nî lūn-bûn

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1995 թուականի Դեկտեմբերին հրատարակուած գիտական յօդուած

@hyw

1995 թվականի դեկտեմբերին հրատարակված գիտական հոդված

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1995年の論文

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1995年論文

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1995年論文

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1995年論文

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1995年論文

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1995年論文

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1995年论文

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name

Hydration of the DNA bases is local

@ast

Hydration of the DNA bases is local

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Hydration of the DNA bases is local

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type

label

Hydration of the DNA bases is local

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Hydration of the DNA bases is local

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Hydration of the DNA bases is local

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prefLabel

Hydration of the DNA bases is local

@ast

Hydration of the DNA bases is local

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Hydration of the DNA bases is local

@nl

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S0006-3495(95)80136-0

P1433

Biophysical Journal

P1476

Hydration of the DNA bases is local

@en

P2860

Structure of a B-DNA dodecamer: conformation and dynamics

Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G

The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals

Crystallographic study of one turn of G/C-rich B-DNA

Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA

Crystal structure of CATGGCCATG and its implications for A-tract bending models

The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

Water structure in cubic insulin crystals

Hydration of DNA bases: analysis of crystallographic data.

P304

2661-2669

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scholarly article

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10.1016/S0006-3495(95)80136-0

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6

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69

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Bohdan Schneider

Helen M. Berman

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1995-12-01T00:00:00Z

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8599672

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1236503

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