RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction.
about
Widespread purifying selection on RNA structure in mammalsComputational analysis of noncoding RNAsCrumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structuresA parallel implementation of the Wuchty algorithm with additional experimental filters to more thoroughly explore RNA conformational spaceRich RNA Structure Landscapes Revealed by Mutate-and-Map AnalysisTranscending the prediction paradigm: novel applications of SHAPE to RNA function and evolutionBioinformatics of prokaryotic RNAsDirect updating of an RNA base-pairing probability matrix with marginal probability constraintsRNA folding with hard and soft constraintsComputational analysis of RNA structures with chemical probing data.Improved prediction of RNA secondary structure by integrating the free energy model with restraints derived from experimental probing dataAnalysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.Data-directed RNA secondary structure prediction using probabilistic modeling.The mutate-and-map protocol for inferring base pairs in structured RNA.Simultaneous folding of alternative RNA structures with mutual constraints: an application to next-generation sequencing-based RNA structure probing.Computational modeling of RNA 3D structures, with the aid of experimental restraints.PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.The mechanisms of RNA SHAPE chemistryRNAdigest: a web-based tool for the analysis and prediction of structure-specific RNAse digestion resultsCombining structure probing data on RNA mutants with evolutionary information reveals RNA-binding interfaces.RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing dataDe novo automated design of small RNA circuits for engineering synthetic riboregulation in living cells.Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions.Probing-directed identification of novel structured RNAs.Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).Computing the probability of RNA hairpin and multiloop formation.RNA dot plots: an image representation for RNA secondary structure analysis and manipulations.Computational analysis of conserved RNA secondary structure in transcriptomes and genomes.Toward a next-generation atlas of RNA secondary structure.Modeling RNA Secondary Structure with Sequence Comparison and Experimental Mapping Data.Comparative and integrative analysis of RNA structural profiling data: current practices and emerging questions.RNA structure through multidimensional chemical mapping.Bridging the gap between in vitro and in vivo RNA folding.Improving tRNAscan-SE Annotation Results via Ensemble Classifiers.Joint modeling of RNase footprint sequencing profiles for genome-wide inference of RNA structureSHAPE directed RNA folding.The four ingredients of single-sequence RNA secondary structure prediction. A unifying perspective.Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7).Multiplex Aptamer Discovery through Apta-Seq and Its Application to ATP Aptamers Derived from Human-Genomic SELEX.
P2860
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P2860
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction.
description
2012 nî lūn-bûn
@nan
2012 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
RNA folding with soft constrai ...... econdary structure prediction.
@ast
RNA folding with soft constrai ...... econdary structure prediction.
@en
RNA folding with soft constrai ...... econdary structure prediction.
@nl
type
label
RNA folding with soft constrai ...... econdary structure prediction.
@ast
RNA folding with soft constrai ...... econdary structure prediction.
@en
RNA folding with soft constrai ...... econdary structure prediction.
@nl
prefLabel
RNA folding with soft constrai ...... econdary structure prediction.
@ast
RNA folding with soft constrai ...... econdary structure prediction.
@en
RNA folding with soft constrai ...... econdary structure prediction.
@nl
P2860
P50
P356
P1476
RNA folding with soft constrai ...... econdary structure prediction.
@en
P2093
Stefan Washietl
P2860
P304
P356
10.1093/NAR/GKS009
P407
P577
2012-01-28T00:00:00Z