Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.
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Thermodynamics of RNA melting, one base pair at a timeLoss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motifMolecular dynamics simulations of sarcin-ricin rRNA motif.MeRNA: a database of metal ion binding sites in RNA structuresMolecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structuresMolecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structureQuantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?Stacking in RNA: NMR of Four Tetramers Benchmark Molecular DynamicsExaminations of tRNA Range of Motion Using Simulations of Cryo-EM Microscopy and X-Ray Data.A molecular dynamics simulation study of oriented DNA with polyamine and sodium counterions: diffusion and averaged binding of water and cations.Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pockets.Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complex.Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EMCHARMM force field parameters for simulation of reactive intermediates in native and thio-substituted ribozymesMolecular dynamics simulations of Guanine quadruplex loops: advances and force field limitations.Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosomeHinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired basesCations and hydration in catalytic RNA: molecular dynamics of the hepatitis delta virus ribozymeClassification and energetics of the base-phosphate interactions in RNATrapped water molecules are essential to structural dynamics and function of a ribozyme.Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNAMolecular dynamics simulations of RNA: an in silico single molecule approach.Extended molecular dynamics of a c-kit promoter quadruplex.Conformations of flanking bases in HIV-1 RNA DIS kissing complexes studied by molecular dynamics.Ligand-mediated and tertiary interactions cooperatively stabilize the P1 region in the guanine-sensing riboswitch.Molecular dynamics simulations and their application to four-stranded DNA.The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.Dynamics of tRNA at different levels of hydration.Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex.Isosteric and nonisosteric base pairs in RNA motifs: molecular dynamics and bioinformatics study of the sarcin-ricin internal loop.Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitchG4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins.DNA and its counterions: a molecular dynamics study.Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe inAssessing the performance of implicit solvation models at a nucleic acid surface.Molecular mechanism of preQ1 riboswitch action: a molecular dynamics study.Changes in the conformation of 5S rRNA cause alterations in principal functions of the ribosomal nanomachine.The snRNP 15.5K protein folds its cognate K-turn RNA: a combined theoretical and biochemical study.
P2860
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P2860
Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.
description
2003 nî lūn-bûn
@nan
2003 թուականի Յունիսին հրատարակուած գիտական յօդուած
@hyw
2003 թվականի հունիսին հրատարակված գիտական հոդված
@hy
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
name
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@ast
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@en
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@nl
type
label
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@ast
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@en
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@nl
prefLabel
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@ast
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@en
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@nl
P2093
P2860
P1433
P1476
Non-Watson-Crick basepairing a ...... ar dynamics of 5S rRNA loop E.
@en
P2093
Jirí Sponer
Kamila Réblová
Kristina Csaszar
Nad'a Spacková
Neocles B Leontis
Richard Stefl
P2860
P304
P356
10.1016/S0006-3495(03)75089-9
P407
P577
2003-06-01T00:00:00Z