RNA-Seq mapping and detection of gene fusions with a suffix array algorithm. - Wikidata - awgldk - TriplyDB

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

http://www.wikidata.org/entity/Q34229580

about

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge.RNA-seq Data: Challenges in and Recommendations for Experimental Design and Analysis.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.Discovering and understanding oncogenic gene fusions through data intensive computational approaches Recurrent ESR1-CCDC170 rearrangements in an aggressive subset of oestrogen receptor-positive breast cancers.Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer.Differential transcriptome profile of peripheral white cells to identify biomarkers involved in oxaliplatin induced neuropathy.Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.JAFFA: High sensitivity transcriptome-focused fusion gene detection.Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision Characterizing the heterogeneity of triple-negative breast cancers using microdissected normal ductal epithelium and RNA-sequencing.Detecting and targetting oncogenic fusion proteins in the genomic era.Genomic profiling of ER+ breast cancers after short-term estrogen suppression reveals alterations associated with endocrine resistance.Identification of KANSARL as the first cancer predisposition fusion gene specific to the population of European ancestry origin.The Protein Encoded by the CCDC170 Breast Cancer Gene Functions to Organize the Golgi-Microtubule Network

P2860

Q30581758-068E1A8A-3747-4DC2-8C2C-F32BD692A605 Q30856802-DF1544A3-037C-417B-AFBC-998E7DC2366A Q31021342-A7A320C8-F0F4-4B50-95D3-98441A4B39DF Q31026263-9EA9CE42-E540-47F7-B976-40AE76F5E2C9 Q31083417-FF962D4F-8E9C-468F-B214-6724A3BB82D1 Q34034269-B7456DA2-703D-4841-8278-0839BBE226F7 Q34044470-9D1C55C3-C2B9-4CCE-A1CA-0C2AF40A0DD6 Q34510118-7797FDB1-8B0F-47B2-9C8E-98EFE61D1FC6 Q34683946-DD37486E-92E5-43C6-8C18-CE3C2A14D9C6 Q34954993-BF4EE9D4-463B-4E15-962E-F781A75E8831 Q35654131-04195DBA-2C21-43AB-A9FA-AAB5549E4967 Q36160576-A5964589-FE56-4D33-A53C-95AEDBB2053D Q36255382-49C06A4C-2FE0-411D-869A-0D1B4D109C1D Q36588864-ACE1009F-A037-48D0-80CE-5E0D0E525EC9 Q37512151-8743D4D3-99D8-4BDF-B4FD-CBA81A239B8A Q38336067-3037ACB0-479E-43D1-840E-E2ADE4B70980 Q38631621-0E313BD9-661C-478E-B5DF-A326F44F7B05 Q40053323-2260582D-8D01-4FAA-8AE9-21B344D19F6F Q41347639-1EEFA045-45F5-4610-91EC-B4CAEA199C23

P2860

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

http://www.wikidata.org/entity/Q34229580

description

2012 nî lūn-bûn

@nan

2012 թուականի Ապրիլին հրատարակուած գիտական յօդուած

@hyw

2012 թվականի ապրիլին հրատարակված գիտական հոդված

@hy

2012年の論文

@ja

2012年論文

@yue

2012年論文

@zh-hant

2012年論文

@zh-hk

2012年論文

@zh-mo

2012年論文

@zh-tw

2012年论文

@wuu

name

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@ast

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@en

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@nl

type

label

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@ast

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@en

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@nl

prefLabel

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@ast

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@en

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@nl

P1433

Q34229580-DDE29BCF-472D-4944-92AE-7A94BEFDC8BE

P1476

Q34229580-0062ED12-FE77-4217-8066-36DEED8035FC

P2093

Q34229580-03A8C3BF-BF89-487B-857D-04F3FBB8F4D5

Q34229580-227DF7A6-C04E-4BA0-9677-8173F3357251

Q34229580-36399CFE-6F15-4F4B-94E9-13143A3AD2FD

Q34229580-3AC8A9D1-93C7-4693-B792-1DECD3DE886D

Q34229580-3DC90209-C223-4B75-8C64-79D012AD683D

Q34229580-4AA8C517-1363-4EF9-A4C1-4F650A9B1E75

Q34229580-4D046A62-1398-4EFE-9CA6-65190D3CA0B3

Q34229580-5A16E1A4-2525-4AEF-B82E-426F4D9CED73

Q34229580-5C585456-376F-46E6-A13D-AB30A10F6D54

Q34229580-617F6FE2-8F63-4B9D-890D-B87BDF978E19

P2860

Q34229580-05F82A4B-F545-42CD-AE9C-A584F45059AC

Q34229580-067FCB12-7CAF-4FDC-B661-7D922F5D0E71

Q34229580-07A16844-4A1F-4743-941B-1A5FC0F82C66

Q34229580-0B14CFB2-6A91-43D6-B5DE-61624F5B5F5F

Q34229580-120A8F5B-0AB9-44D0-8DE4-E51815C9565A

Q34229580-12EB5CCF-A7A7-4C7B-8D2C-3D5DAD54D608

Q34229580-258A3DB5-59FE-47FE-8422-AD979DC07115

Q34229580-2FC077D0-C81A-400D-9D15-C6A4082A8779

Q34229580-30EFCB47-231F-4955-9C81-33444F1120ED

Q34229580-316BFA5E-D7ED-40D6-A5F7-65395440E338

P304

Q34229580-E2D04835-73EF-45AB-BCAB-CCFC55D71FFF

P31

Q34229580-F656A643-7A42-4C00-A7DA-FF0F3F3D7701

P356

Q34229580-E30E043F-73E5-4527-A336-276E2FB87D9A

P433

Q34229580-3FCAD8BC-3E9F-4550-8DED-C74D5D453251

P478

Q34229580-C953EAA1-0972-41A7-B252-77E018B191EC

P577

Q34229580-FB6ECBF8-9C73-41E4-9328-591DA76B4EFA

P5875

Q34229580-52B9BBD7-9E43-423D-BB9E-120831A042DB

P698

Q34229580-84B0AF6C-D279-4AFA-BBF9-F7BA1AA20996

P921

Q34229580-4C178BBC-D35A-4DE8-A99E-1F2D15A10D89

P932

Q34229580-133E2A96-B46C-4748-A20C-629908778A61

P356

JOURNAL.PCBI.1002464

P1433

PLOS Computational Biology

P1476

RNA-Seq mapping and detection of gene fusions with a suffix array algorithm.

@en

P2093

Asim S Siddiqui

http://www.w3.org/2001/XMLSchema#string

Benjamin S Kong

http://www.w3.org/2001/XMLSchema#string

Catalin Barbacioru

http://www.w3.org/2001/XMLSchema#string

Chieh-Yuan Li

http://www.w3.org/2001/XMLSchema#string

Fiona C Hyland

http://www.w3.org/2001/XMLSchema#string

Heinz Breu

http://www.w3.org/2001/XMLSchema#string

Jeffrey K Ichikawa

http://www.w3.org/2001/XMLSchema#string

Jian Gu

http://www.w3.org/2001/XMLSchema#string

Joel P Brockman

http://www.w3.org/2001/XMLSchema#string

John P Bodeau

http://www.w3.org/2001/XMLSchema#string

P2860

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer

RNA-Seq: a revolutionary tool for transcriptomics

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

Optimization of de novo transcriptome assembly from next-generation sequencing data

Integrative analysis of the melanoma transcriptome

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

The transcriptional landscape of the yeast genome defined by RNA sequencing

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome

RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data

P304

e1002464

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1371/JOURNAL.PCBI.1002464

http://www.w3.org/2001/XMLSchema#string

P433

4

http://www.w3.org/2001/XMLSchema#string

P478

8

http://www.w3.org/2001/XMLSchema#string

P577

2012-04-05T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

223977897

http://www.w3.org/2001/XMLSchema#string

P698

22496636

http://www.w3.org/2001/XMLSchema#string

P921

P932

3320572

http://www.w3.org/2001/XMLSchema#string