RNA-SeQC: RNA-seq metrics for quality control and process optimization - Wikidata - awgldk - TriplyDB

RNA-SeQC: RNA-seq metrics for quality control and process optimization

RNA-SeQC: RNA-seq metrics for quality control and process optimization

http://www.wikidata.org/entity/Q34249292

about

Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.Design and computational analysis of single-cell RNA-sequencing experiments Analysis of Whole Transcriptome Sequencing Data: Workflow and Software Single-cell RNA-Seq resolves cellular complexity in sensory organs from the neonatal inner ear.In the spotlight: Bioinformatics Analysis of the transcriptome in molecular epidemiology studies Huntington’s disease blood and brain show a common gene expression pattern and share an immune signature with Alzheimer’s disease SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome.Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers Qualimap: evaluating next-generation sequencing alignment data.Next-generation technologies and data analytical approaches for epigenomics.Prevention, diagnosis and treatment of high-throughput sequencing data pathologies.Efficient digest of high-throughput sequencing data in a reproducible report.PRADA: pipeline for RNA sequencing data analysis Comparing reference-based RNA-Seq mapping methods for non-human primate data.Detecting and correcting systematic variation in large-scale RNA sequencing data Determining the quality and complexity of next-generation sequencing data without a reference genome.Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package QoRTs: a comprehensive toolset for quality control and data processing of RNA-Seq experiments mRIN for direct assessment of genome-wide and gene-specific mRNA integrity from large-scale RNA-sequencing data.Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.iSRAP - a one-touch research tool for rapid profiling of small RNA-seq data.Transcript Expression Data from Human Islets Links Regulatory Signals from Genome-Wide Association Studies for Type 2 Diabetes and Glycemic Traits to Their Downstream Effectors.Multi-perspective quality control of Illumina RNA sequencing data analysis.dupRadar: a Bioconductor package for the assessment of PCR artifacts in RNA-Seq data.InFusion: Advancing Discovery of Fusion Genes and Chimeric Transcripts from Deep RNA-Sequencing Data.Transcriptome analysis of the bloodstream stage from the parasite Trypanosoma vivax.Dissecting the genetic architecture of Fusarium verticillioides seed rot resistance in maize by combining QTL mapping and genome-wide association analysis.Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer.Quality control on the frontier.Decoding human gene expression signatures in the brain The U2AF1S34F mutation induces lineage-specific splicing alterations in myelodysplastic syndromes.Single-cell RNA-sequencing of the brain.Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals.Identification of mRNAs and lincRNAs associated with lung cancer progression using next-generation RNA sequencing from laser micro-dissected archival FFPE tissue specimens.Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.Comparative analysis of RNA sequencing methods for degraded or low-input samples.

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

http://www.wikidata.org/entity/Q34249292

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2012 nî lūn-bûn

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2012 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2012 թվականի ապրիլին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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RNA-SeQC: RNA-seq metrics for quality control and process optimization

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Andrey Sivachenko

http://www.w3.org/2001/XMLSchema#string

Chris Williams

http://www.w3.org/2001/XMLSchema#string

David S DeLuca

http://www.w3.org/2001/XMLSchema#string

Joshua Z Levin

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Marc-Danie Nazaire

http://www.w3.org/2001/XMLSchema#string

Michael Reich

http://www.w3.org/2001/XMLSchema#string

Timothy Fennell

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P2860

GENCODE: producing a reference annotation for ENCODE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

Fast and accurate short read alignment with Burrows-Wheeler transform

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

The Sequence Alignment/Map format and SAMtools

GenePattern 2.0

Comprehensive comparative analysis of strand-specific RNA sequencing methods.

Computational methods for transcriptome annotation and quantification using RNA-seq.

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1530-1532

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10.1093/BIOINFORMATICS/BTS196

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11

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28

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224855995

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22539670

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quality control

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3356847

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