Incorporating RNA-seq data into the zebrafish Ensembl genebuild - Wikidata - awgldk - TriplyDB

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

http://www.wikidata.org/entity/Q34338283

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Insulin receptor-like ectodomain genes and splice variants are found in both arthropods and human brain cDNA RNA-Seq technology and its application in fish transcriptomics The innate immune-related genes in catfish Snake Genome Sequencing: Results and Future Prospects Ensembl 2013 Both Male-Biased and Female-Biased Genes Evolve Faster in Fish Genomes Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation The zebrafish reference genome sequence and its relationship to the human genome Genome-guided transcript assembly by integrative analysis of RNA sequence data.Oncogenic BRAF disrupts thyroid morphogenesis and function via twist expression.Diversity and dynamics of the Drosophila transcriptome The sheep genome illuminates biology of the rumen and lipid metabolism Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.De novo assembly, characterization and functional annotation of Senegalese sole (Solea senegalensis) and common sole (Solea solea) transcriptomes: integration in a database and design of a microarray.Genome comparison of two Magnaporthe oryzae field isolates reveals genome variations and potential virulence effectors.Transcriptome sequencing of Atlantic salmon (Salmo salar L.) notochord prior to development of the vertebrae provides clues to regulation of positional fate, chordoblast lineage and mineralisation Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish.Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-Seq and ESTs.Global gene expression patterns of grass carp following compensatory growth.High-throughput and quantitative genome-wide messenger RNA sequencing for molecular phenotyping.EFTUD2 deficiency in vertebrates: Identification of a novel human mutation and generation of a zebrafish model.Correlated expression of retrocopies and parental genes in zebrafish.Comparison of Ribosomal RNA Removal Methods for Transcriptome Sequencing Workflows in Teleost Fish.Targeted chromosomal deletions and inversions in zebrafish.Identification of the zebrafish maternal and paternal transcriptomes Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin The Ensembl gene annotation system.A systematic genome-wide analysis of zebrafish protein-coding gene function Multi-allelic phenotyping--a systematic approach for the simultaneous analysis of multiple induced mutations Selenoprotein H is an essential regulator of redox homeostasis that cooperates with p53 in development and tumorigenesis Down-regulation of coasy, the gene associated with NBIA-VI, reduces Bmp signaling, perturbs dorso-ventral patterning and alters neuronal development in zebrafish.Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.The Zebrafish Heart as a Model of Mammalian Cardiac Function.Finding Genes in Genome Sequence.Whole genome sequencing of Chinese clearhead icefish, Protosalanx hyalocranius.Transcriptional Complexity and Distinct Expression Patterns of auts2 Paralogs in Danio rerio.Hypothalamic differences in expression of genes involved in monoamine synthesis and signaling pathways after insulin injection in chickens from lines selected for high and low body weight.

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P2860

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

http://www.wikidata.org/entity/Q34338283

description

2012 nî lūn-bûn

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2012 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2012 թվականի հուլիսին հրատարակված գիտական հոդված

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2012年の論文

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2012年論文

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2012年論文

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2012年論文

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2012年论文

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name

Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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Incorporating RNA-seq data into the zebrafish Ensembl genebuild

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John E Collins

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Automated generation of heuristics for biological sequence comparison

Mapping and quantifying mammalian transcriptomes by RNA-Seq

RNA-Seq: a revolutionary tool for transcriptomics

Optimization of de novo transcriptome assembly from next-generation sequencing data

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

The transcriptional landscape of the yeast genome defined by RNA sequencing

Accurate whole human genome sequencing using reversible terminator chemistry

Annotating genomes with massive-scale RNA sequencing

Fast and accurate short read alignment with Burrows-Wheeler transform

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