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Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained ModelsMolecular mechanics of the alpha-actinin rod domain: bending, torsional, and extensional behaviorElastic network models capture the motions apparent within ensembles of RNA structuresDefining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.A reduced mechanical model for cAMP-modulated gating in HCN channelsAn analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior.Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.Application of elastic network models to proteins in the crystalline state.Shape-Dependent Global Deformation Modes of Large Protein StructuresRibosome Mechanics Informs about Mechanism.Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions.Wiggle-predicting functionally flexible regions from primary sequenceFunctional clustering of yeast proteins from the protein-protein interaction network.Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion.Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Antiport mechanism for Cl(-)/H(+) in ClC-ec1 from normal-mode analysis.Molecular mechanics of Staphylococcus aureus adhesin, CNA, and the inhibition of bacterial adhesion by stretching collagen.MAVENs: motion analysis and visualization of elastic networks and structural ensembles.A molecular dynamics investigation of vinculin activation.Models to Approximate the Motions of Protein Loops.Developing Polyamine-Based Peptide Amphiphiles with Tunable Morphology and Physicochemical Properties.A New Method for Coarse-Grained Elastic Normal-Mode Analysis.Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signalAnalysis of domain movements in glutamine-binding protein with simple models.Structure of testis ACE glycosylation mutants and evidence for conserved domain movement.The Intrinsic Dynamics and Unfolding Process of an Antibody Fab Fragment Revealed by Elastic Network ModelPredicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic modelsPIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environmentMechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modesA minimalist network model for coarse-grained normal mode analysis and its application to biomolecular x-ray crystallography.Coevolution of function and the folding landscape: correlation with density of native contacts.Focused functional dynamics of supramolecules by use of a mixed-resolution elastic network model.Insights from coarse-grained Gō models for protein folding and dynamics.Collective variable approaches for single molecule flexible fitting and enhanced sampling.Perspective: Coarse-grained models for biomolecular systems.The translation elongation cycle-capturing multiple states by cryo-electron microscopy.High-resolution crystal structures leverage protein binding affinity predictions.Influence of nonuniform geometry on nanoindentation of viral capsids.The Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.
P2860
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P2860
description
2005 nî lūn-bûn
@nan
2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
The role of shape in determining molecular motions.
@ast
The role of shape in determining molecular motions.
@en
The role of shape in determining molecular motions.
@nl
type
label
The role of shape in determining molecular motions.
@ast
The role of shape in determining molecular motions.
@en
The role of shape in determining molecular motions.
@nl
prefLabel
The role of shape in determining molecular motions.
@ast
The role of shape in determining molecular motions.
@en
The role of shape in determining molecular motions.
@nl
P2860
P1433
P1476
The role of shape in determining molecular motions.
@en
P2093
Jianpeng Ma
Mingyang Lu
P2860
P304
P356
10.1529/BIOPHYSJ.105.065904
P407
P577
2005-07-29T00:00:00Z