COBRApy: COnstraints-Based Reconstruction and Analysis for Python - Wikidata - awgldk - TriplyDB

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

http://www.wikidata.org/entity/Q34911268

about

Systems biology of the structural proteome BiGG Models: A platform for integrating, standardizing and sharing genome-scale models sybil – Efficient constraint-based modelling in R Synthetic biology outside the cell: linking computational tools to cell-free systems Using Genome-scale Models to Predict Biological Capabilities Using bioconductor package BiGGR for metabolic flux estimation based on gene expression changes in brain Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach Path2Models: large-scale generation of computational models from biochemical pathway maps GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data Reconstruction of genome-scale human metabolic models using omics data.Tools for visualization and analysis of molecular networks, pathways, and -omics data.Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways.Multi-omic data integration enables discovery of hidden biological regularities.DistributedFBA.jl: high-level, high-performance flux balance analysis in Julia.Toward Community Standards and Software for Whole-Cell Modeling A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.Current advances in systems and integrative biology The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis.Improving collaboration by standardization efforts in systems biology.Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.FlexFlux: combining metabolic flux and regulatory network analyses PSAMM: A Portable System for the Analysis of Metabolic Models.What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy.Cell scale host-pathogen modeling: another branch in the evolution of constraint-based methods.solveME: fast and reliable solution of nonlinear ME models Modelling microbial metabolic rewiring during growth in a complex medium Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models.The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism Networks of energetic and metabolic interactions define dynamics in microbial communities Whole Cell Modeling: From Single Cells to Colonies.Global characterization of in vivo enzyme catalytic rates and their correspondence to in vitro kcat measurements From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity MMinte: an application for predicting metabolic interactions among the microbial species in a community.Personalized Prediction of Proliferation Rates and Metabolic Liabilities in Cancer Biopsies.Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function.

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

http://www.wikidata.org/entity/Q34911268

description

2013 nî lūn-bûn

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2013 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2013 թվականի օգոստոսին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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2013年论文

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name

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

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BMC Systems Biology

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COBRApy: COnstraints-Based Reconstruction and Analysis for Python

@en

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Daniel R Hyduke

http://www.w3.org/2001/XMLSchema#string

P2860

The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum

Impact of the solvent capacity constraint on E. coli metabolism

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

Software applications for flux balance analysis

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project

What is flux balance analysis?

High-throughput generation, optimization and analysis of genome-scale metabolic models

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

Functional states of the genome-scale Escherichia coli transcriptional regulatory system

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10.1186/1752-0509-7-74

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7

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Joshua A. Lerman

Bernhard Palsson

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