Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
about
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomesIncorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structureRNAstructure: software for RNA secondary structure prediction and analysisEnhanced RNA cleavage within bulge-loops by an artificial ribonucleaseSingle nucleotide RNA choreographyA sulfate pocket formed by three GoU pairs in the 0.97 A resolution X-ray structure of a nonameric RNA.An Interlocked Dimer of the Protelomerase TelK Distorts DNA Structure for the Formation of Hairpin TelomeresNoncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplexStructural features of the DNA hairpin d(ATCCTA-GTTA-TAGGAT): formation of a G-A base pair in the loopThe effect of cytidine on the structure and function of an RNA ligase ribozyme.Optimal alphabets for an RNA worldIdentifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.Effects of base substitutions in an RNA hairpin from molecular dynamics and free energy simulations.Mg2+ modulation of EMCV IRES key activity fragment equilibria and r(G*C) base-pair kinetics.Thermodynamic characterization of naturally occurring RNA tetraloopsComparison between CUUG and UUCG tetraloops: thermodynamic stability and structural features analyzed by UV absorption and vibrational spectroscopy.Effects of magnesium ions on two EMCV IRES key activity fragments.The energetics of small internal loops in RNA.Thermodynamic characterization of RNA triloopsEnthalpy-driven RNA folding: single-molecule thermodynamics of tetraloop-receptor tertiary interaction.A test of the model to predict unusually stable RNA hairpin loop stabilityComputational approaches for RNA energy parameter estimationIsoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein functionNanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.Stability of intrastrand hairpin structures formed by the CAG/CTG class of DNA triplet repeats associated with neurological diseases.Sequence-independent inhibition of RNA transcription by DNA dumbbells and other decoys.Occurrence, solution structure and stability of DNA hairpins stabilized by a GA/CG helix unit.Thermodynamics of DNA hairpins: contribution of loop size to hairpin stability and ethidium binding.The solution structure of a d[C(TTCG)G] DNA hairpin and comparison to the unusually stable RNA analogue.A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formationStatistical potentials for hairpin and internal loops improve the accuracy of the predicted RNA structure.The gateway pDEST17 expression vector encodes a -1 ribosomal frameshifting sequenceEffects of non-nearest neighbors on the thermodynamic stability of RNA GNRA hairpin tetraloops.Capillary electrophoresis is a sensitive monitor of the hairpin-random coil transition in DNA oligomers.Folding of a DNA hairpin loop structure in explicit solvent using replica-exchange molecular dynamics simulations.Polygamous particlesFree-energy landscape of a hyperstable RNA tetraloop.An evaluation of custom microarray applications: the oligonucleotide design challenge.Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.
P2860
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P2860
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
description
1992 nî lūn-bûn
@nan
1992 թուականի Փետրուարին հրատարակուած գիտական յօդուած
@hyw
1992 թվականի փետրվարին հրատարակված գիտական հոդված
@hy
1992年の論文
@ja
1992年論文
@yue
1992年論文
@zh-hant
1992年論文
@zh-hk
1992年論文
@zh-mo
1992年論文
@zh-tw
1992年论文
@wuu
name
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@ast
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@en
type
label
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@ast
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@en
prefLabel
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@ast
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@en
P2860
P356
P1476
Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops
@en
P2093
P2860
P304
P356
10.1093/NAR/20.4.819
P407
P577
1992-02-01T00:00:00Z