The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements. - Wikidata - awgldk - TriplyDB

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

http://www.wikidata.org/entity/Q35254048

about

The Orthology Ontology: development and applications Molecular classification based on apomorphic amino acids (Arthropoda, Hexapoda): Integrative taxonomy in the era of phylogenomics Homoeologs: What Are They and How Do We Infer Them?Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases The Dedicated Chaperone Acl4 Escorts Ribosomal Protein Rpl4 to Its Nuclear Pre-60S Assembly Site Developing integrated crop knowledge networks to advance candidate gene discovery Computational Identification of the Paralogs and Orthologs of Human Cytochrome P450 Superfamily and the Implication in Drug Discovery The 2015 Nucleic Acids Research Database Issue and molecular biology database collection Oral transfer of chemical cues, growth proteins and hormones in social insects.HieranoiDB: a database of orthologs inferred by Hieranoid eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences Standardized benchmarking in the quest for orthologs Protein Bioinformatics Databases and Resources.Core Genes Evolve Rapidly in the Long-term Evolution Experiment with Escherichia coli Comparative genomics reveals contraction in olfactory receptor genes in bats Prediction of microbial phenotypes based on comparative genomics.Analysis of the FnrL regulon in Rhodobacter capsulatus reveals limited regulon overlap with orthologues from Rhodobacter sphaeroides and Escherichia coli.Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture.Role of mRNA structure in the control of protein folding A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes.Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes.Identification of innate lymphoid cells in single-cell RNA-Seq data.The gene family-free median of three.The Response Regulator BfmR Is a Potential Drug Target for Acinetobacter baumannii.The multiple evolutionary origins of the eukaryotic N-glycosylation pathway.MultiSyn: A Webtool for Multiple Synteny Detection and Visualization of User's Sequence of Interest Compared to Public Plant Species Iron-Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein-Protein Interaction Functional Annotations of Paralogs: A Blessing and a Curse Membrane Proteins Are Dramatically Less Conserved than Water-Soluble Proteins across the Tree of Life A computational interactome and functional annotation for the human proteome.An Essential Factor for High Mg2+ Tolerance of Staphylococcus aureus.Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.Tutorial on Protein Ontology Resources.ORCAN-a web-based meta-server for real-time detection and functional annotation of orthologs.Gene Ontology: Pitfalls, Biases, and Remedies.Primer on the Gene Ontology.Towards Consensus Gene Ages.

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The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

http://www.wikidata.org/entity/Q35254048

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2014 nî lūn-bûn

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2014 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի նոյեմբերին հրատարակված գիտական հոդված

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2014年の論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年論文

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2014年论文

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Clément-Marie Train

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Gaston H Gonnet

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Ivana Piližota

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Natasha Glover

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Nives Škunca

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Steven Müller

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P2860

Plant NBS-LRR proteins: adaptable guards

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

Gene ontology: tool for the unification of biology

OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups.

PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees

OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs

OMA 2011: orthology inference among 1000 complete genomes

Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

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D240-9

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10.1093/NAR/GKU1158

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Database issue

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43

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Christophe Dessimoz

Henning Redestig

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Bartlomiej Tomiczek

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