Predicting tissue-specific enhancers in the human genome. - Wikidata - awgldk - TriplyDB

Predicting tissue-specific enhancers in the human genome.

Predicting tissue-specific enhancers in the human genome.

http://www.wikidata.org/entity/Q35608683

about

Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend What does our genome encode?JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update Cell-type selective chromatin remodeling defines the active subset of FOXA1-bound enhancers Genomic regulatory blocks underlie extensive microsynteny conservation in insects Estrogenic Endocrine Disrupting Chemicals Influencing NRF1 Regulated Gene Networks in the Development of Complex Human Brain Diseases Decoding enhancers using massively parallel reporter assays ChIP-seq accurately predicts tissue-specific activity of enhancers The most deeply conserved noncoding sequences in plants serve similar functions to those in vertebrates despite large differences in evolutionary rates Defining an EPOR- regulated transcriptome for primary progenitors, including Tnfr-sf13c as a novel mediator of EPO- dependent erythroblast formation Gene set control analysis predicts hematopoietic control mechanisms from genome-wide transcription factor binding data.Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees Prediction-based approaches to characterize bidirectional promoters in the mammalian genome DiRE: identifying distant regulatory elements of co-expressed genes.Expression patterns of protein kinases correlate with gene architecture and evolutionary rates.Genetic and environmental pathways to complex diseases.Identifying regulatory elements in eukaryotic genomes.Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.Genome-wide discovery of human heart enhancers.Identification of interacting transcription factors regulating tissue gene expression in human Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances.Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers Gene expression of NMDA receptor subunits in the cerebellum of elderly patients with schizophrenia Machine learning and genome annotation: a match meant to be?Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis Discover regulatory DNA elements using chromatin signatures and artificial neural network.Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.Transcriptional enhancers in protein-coding exons of vertebrate developmental genes.Nicotinic α5 receptor subunit mRNA expression is associated with distant 5' upstream polymorphisms.Interrogating transcriptional regulatory sequences in Tol2-mediated Xenopus transgenics Functional variants in DPYSL2 sequence increase risk of schizophrenia and suggest a link to mTOR signaling The importance of being cis: evolution of orthologous fish and mammalian enhancer activity.Phospho-MED1-enhanced UBE2C locus looping drives castration-resistant prostate cancer growth.Enhancers in embryonic stem cells are enriched for transposable elements and genetic variations associated with cancers.Improved accuracy of supervised CRM discovery with interpolated Markov models and cross-species comparison.DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications.A distal modular enhancer complex acts to control pituitary- and nervous system-specific expression of the LHX3 regulatory gene.

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P2860

Predicting tissue-specific enhancers in the human genome.

http://www.wikidata.org/entity/Q35608683

description

2007 nî lūn-bûn

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2007年论文

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name

Predicting tissue-specific enhancers in the human genome.

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Predicting tissue-specific enhancers in the human genome.

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Predicting tissue-specific enhancers in the human genome.

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Predicting tissue-specific enhancers in the human genome.

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Predicting tissue-specific enhancers in the human genome.

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Predicting tissue-specific enhancers in the human genome.

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Genome Research

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Predicting tissue-specific enhancers in the human genome.

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Gabriela G Loots

http://www.w3.org/2001/XMLSchema#string

Ivan Ovcharenko

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Len A Pennacchio

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Marcelo A Nobrega

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P2860

Highly conserved non-coding sequences are associated with vertebrate development

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

Genome sequence, comparative analysis and haplotype structure of the domestic dog

Initial sequencing and comparative analysis of the mouse genome

KEGG: kyoto encyclopedia of genes and genomes

Estrogen-related receptor alpha directs peroxisome proliferator-activated receptor alpha signaling in the transcriptional control of energy metabolism in cardiac and skeletal muscle

CREME: Cis-Regulatory Module Explorer for the human genome

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

The human genome browser at UCSC

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