Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome.
about
Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomesModerate mutation rate in the SARS coronavirus genome and its implicationsTransition-transversion bias is not universal: a counter example from grasshopper pseudogenesSingle Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) DataTranscriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogenyA fast and accurate SNP detection algorithm for next-generation sequencing data.Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data.Application of machine learning in SNP discovery.Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome.A novel statistical method to estimate the effective SNP size in vertebrate genomes and categorized genomic regions.In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regionsLarge-scale inference of the point mutational spectrum in human segmental duplicationsPatterns of nucleotides that flank substitutions in human orthologous genes.Context dependent substitution biases vary within the human genome.Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes.Mutation scanning by meltMADGE: validations using BRCA1 and LDLR, and demonstration of the potential to identify severe, moderate, silent, rare, and paucimorphic mutations in the general population.Features of recent codon evolution: a comparative polymorphism-fixation studySNP detection for massively parallel whole-genome resequencing.A novel application of pattern recognition for accurate SNP and indel discovery from high-throughput data: targeted resequencing of the glucocorticoid receptor co-chaperone FKBP5 in a Caucasian populationBis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data.Neighbor preferences of amino acids and context-dependent effects of amino acid substitutions in human, mouse, and dog.Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition.Designing, optimization and validation of tetra-primer ARMS PCR protocol for genotyping mutations in caprine Fec genes.Genome-wide discovery of human splicing branchpointsOn the sequence-directed nature of human gene mutation: the role of genomic architecture and the local DNA sequence environment in mediating gene mutations underlying human inherited disease.Patterns of repeat-induced point mutation in transposable elements of basidiomycete fungi.A Bayesian Assignment Method for Ambiguous Bisulfite Short ReadsAn Advanced Model to Precisely Estimate the Cell-Free Fetal DNA Concentration in Maternal PlasmaGenome analyses substantiate male mutation bias in many speciesSingle genome retrieval of context-dependent variability in mutation rates for human germlineReview on the development of genotyping methods for assessing farm animal diversity.The complementary neighborhood patterns and methylation-to-mutation likelihood structures of 15,110 single-nucleotide polymorphisms in the bovine genome.Branchio-oto-renal syndrome (BOR): novel mutations in the EYA1 gene, and a review of the mutational genetics of BOR.Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms.Understanding what determines the frequency and pattern of human germline mutations.Transition and Transversion Mutations Are Biased towards GC in Transposons of Chilo suppressalis (Lepidoptera: Pyralidae).Sequence context-specific mutagenesis and base excision repair.Profiling of mismatch discrimination in RNAi enabled rational design of allele-specific siRNAs.Neighboring-nucleotide effects on the mutation patterns of the rice genome.Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution.
P2860
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P2860
Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome.
description
2002 nî lūn-bûn
@nan
2002年の論文
@ja
2002年論文
@yue
2002年論文
@zh-hant
2002年論文
@zh-hk
2002年論文
@zh-mo
2002年論文
@zh-tw
2002年论文
@wuu
2002年论文
@zh
2002年论文
@zh-cn
name
Neighboring-nucleotide effects ...... hisms across the human genome.
@ast
Neighboring-nucleotide effects ...... hisms across the human genome.
@en
type
label
Neighboring-nucleotide effects ...... hisms across the human genome.
@ast
Neighboring-nucleotide effects ...... hisms across the human genome.
@en
prefLabel
Neighboring-nucleotide effects ...... hisms across the human genome.
@ast
Neighboring-nucleotide effects ...... hisms across the human genome.
@en
P2860
P356
P1433
P1476
Neighboring-nucleotide effects ...... hisms across the human genome.
@en
P2093
Zhongming Zhao
P2860
P304
P356
10.1101/GR.287302
P577
2002-11-01T00:00:00Z