SCOPE: a web server for practical de novo motif discovery. - Wikidata - awgldk - TriplyDB

SCOPE: a web server for practical de novo motif discovery.

SCOPE: a web server for practical de novo motif discovery.

http://www.wikidata.org/entity/Q35914127

about

RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti Computational tools and resources for prediction and analysis of gene regulatory regions in the chick genome The Cerato-Platanin protein Epl-1 from Trichoderma harzianum is involved in mycoparasitism, plant resistance induction and self cell wall protection The bZIP transcription factor Rca1p is a central regulator of a novel CO₂ sensing pathway in yeast.Defining the Essential Function of Yeast Hsf1 Reveals a Compact Transcriptional Program for Maintaining Eukaryotic Proteostasis.Genome-wide location analysis reveals distinct transcriptional circuitry by paralogous regulators Foxa1 and Foxa2 ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for neurospora white collar complex Quorum Quenching of Nitrobacter winogradskyi Suggests that Quorum Sensing Regulates Fluxes of Nitrogen Oxide(s) during Nitrification A review of ensemble methods for de novo motif discovery in ChIP-Seq data.Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA).Nuclear Factor kappa B is central to Marek's disease herpesvirus induced neoplastic transformation of CD30 expressing lymphocytes in-vivo Cluster analysis of Plasmodium RNA-seq time-course data identifies stage-specific co-regulated biological processes and regulatory elements.Aryl hydrocarbon receptor antagonism mitigates cytokine-mediated inflammatory signalling in primary human fibroblast-like synoviocytes.GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments DMINDA: an integrated web server for DNA motif identification and analyses The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes.Identification of early zygotic genes in the yellow fever mosquito Aedes aegypti and discovery of a motif involved in early zygotic genome activation Mapping the core of the Arabidopsis circadian clock defines the network structure of the oscillator.Characterization of the cryptic AV3 promoter of ageratum yellow vein virus in prokaryotic and eukaryotic systems.Delayed Ras/PKA signaling augments the unfolded protein response In silico discovery of novel transcription factors regulated by mTOR-pathway activities.In vitro site selection of a consensus binding site for the Drosophila melanogaster Tbx20 homolog midline A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs Circadian phase has profound effects on differential expression analysis.Transcriptional dynamics of a conserved gene expression network associated with craniofacial divergence in Arctic charr.The transcriptional and gene regulatory network of Lactococcus lactis MG1363 during growth in milk Genome-wide prediction and analysis of human tissue-selective genes using microarray expression data Nucleotide composition-linked divergence of vertebrate core promoter architecture.Development of a Fur-dependent and tightly regulated expression system in Escherichia coli for toxic protein synthesis.CAMTA 1 regulates drought responses in Arabidopsis thaliana A comprehensive functional portrait of two heat shock factor-type transcriptional regulators involved in Candida albicans morphogenesis and virulence Two enhancers control transcription of Drosophila muscleblind in the embryonic somatic musculature and in the central nervous system.The Ah receptor regulates growth factor expression in head and neck squamous cell carcinoma cell lines.Using SCOPE to identify potential regulatory motifs in coregulated genes.Transcriptome Analysis of Honeybee (Apis Mellifera) Haploid and Diploid Embryos Reveals Early Zygotic Transcription during Cleavage.Dis3- and exosome subunit-responsive 3' mRNA instability elements Expression profile of a Caenorhabditis elegans model of adult neuronal ceroid lipofuscinosis reveals down regulation of ubiquitin E3 ligase components.Multiple cis-elements and trans-acting factors regulate dynamic spatio-temporal transcription of let-7 in Caenorhabditis elegans

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P2860

SCOPE: a web server for practical de novo motif discovery.

http://www.wikidata.org/entity/Q35914127

description

2007 nî lūn-bûn

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2007年の論文

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SCOPE: a web server for practical de novo motif discovery.

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SCOPE: a web server for practical de novo motif discovery.

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SCOPE: a web server for practical de novo motif discovery.

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SCOPE: a web server for practical de novo motif discovery.

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Nucleic Acids Research

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SCOPE: a web server for practical de novo motif discovery.

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Arijit Chakravarty

http://www.w3.org/2001/XMLSchema#string

Charles E DeZiel

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Jonathan M Carlson

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Robert H Gross

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P2860

Limitations and potentials of current motif discovery algorithms.

WebLogo: A Sequence Logo Generator

Assessing computational tools for the discovery of transcription factor binding sites

Practical strategies for discovering regulatory DNA sequence motifs.

Bounded search for de novo identification of degenerate cis-regulatory elements.

SPACER: identification of cis-regulatory elements with non-contiguous critical residues.

A survey of motif discovery methods in an integrated framework

Applied bioinformatics for the identification of regulatory elements.

Computational identification of transcriptional regulatory elements in DNA sequence.

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

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W259-64

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scholarly article

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10.1093/NAR/GKM310

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Web Server issue

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35

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2007-05-07T00:00:00Z

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17485471

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1933170

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