Computational identification of transcriptional regulatory elements in DNA sequence.
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Phyloscan: locating transcription-regulating binding sites in mixed aligned and unaligned sequence dataBigFoot: Bayesian alignment and phylogenetic footprinting with MCMCSystematic identification of cis-regulatory sequences active in mouse and human embryonic stem cellsAccurate recognition of cis-regulatory motifs with the correct lengths in prokaryotic genomes.PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data SetsProbabilistic inference of transcription factor binding from multiple data sources.Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.A novel ensemble learning method for de novo computational identification of DNA binding sites.Identification of eukaryotic promoter regulatory elements using nonhomologous random recombination.Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions.CompMoby: comparative MobyDick for detection of cis-regulatory motifsDiscovery of cis-elements between sorghum and rice using co-expression and evolutionary conservationModeling the quantitative specificity of DNA-binding proteins from example binding sites.Transcription factor site dependencies in human, mouse and rat genomes.Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and PoaceaeImproving MEME via a two-tiered significance analysis.MotifClick: prediction of cis-regulatory binding sites via merging cliques.AMD, an automated motif discovery tool using stepwise refinement of gapped consensuses.Assessing the effects of symmetry on motif discovery and modeling.Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic featuresTowards biological characters of interactions between transcription factors and their DNA targets in mammals.RNA-ID, a highly sensitive and robust method to identify cis-regulatory sequences using superfolder GFP and a fluorescence-based assay.Nuclear RNA sequencing of the mouse erythroid cell transcriptomeBayesian centroid estimation for motif discoveryIdentifying functional transcription factor binding sites in yeast by considering their positional preference in the promotersGenome-wide analysis of transcription factor binding sites and their characteristic DNA structures.SPIC: a novel similarity metric for comparing transcription factor binding site motifs based on information contentsIdentifying transcriptional cis-regulatory modules in animal genomes.NF-κB addiction and its role in cancer: 'one size does not fit all'.Encoded expansion: an efficient algorithm to discover identical string motifs.Sequence information gain based motif analysisDeciphering transcriptional regulations coordinating the response to environmental changes.SCOPE: a web server for practical de novo motif discovery.Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegansCLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design.An information transmission model for transcription factor binding at regulatory DNA sites.Evidence classification of high-throughput protocols and confidence integration in RegulonDB.Functional genomics of the chicken--a model organism.Evolutionary Conserved Motif Finder (ECMFinder) for genome-wide identification of clustered YY1- and CTCF-binding sites.Localization of the cis-enhancer element for mouse type X collagen expression in hypertrophic chondrocytes in vivo.
P2860
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P2860
Computational identification of transcriptional regulatory elements in DNA sequence.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
2006年论文
@zh
2006年论文
@zh-cn
name
Computational identification of transcriptional regulatory elements in DNA sequence.
@ast
Computational identification of transcriptional regulatory elements in DNA sequence.
@en
type
label
Computational identification of transcriptional regulatory elements in DNA sequence.
@ast
Computational identification of transcriptional regulatory elements in DNA sequence.
@en
prefLabel
Computational identification of transcriptional regulatory elements in DNA sequence.
@ast
Computational identification of transcriptional regulatory elements in DNA sequence.
@en
P2860
P356
P1476
Computational identification of transcriptional regulatory elements in DNA sequence.
@en
P2093
Debraj GuhaThakurta
P2860
P304
P356
10.1093/NAR/GKL372
P407
P577
2006-07-19T00:00:00Z