Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields.
about
RNA folding pathways in stop motion.Steric interactions lead to collective tilting motion in the ribosome during mRNA-tRNA translocationPredicting the Kinetics of RNA Oligonucleotides Using Markov State Models.Understanding the kinetic mechanism of RNA single base pair formationHairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations.Free-energy landscape of a hyperstable RNA tetraloop.Evaluating Force Field Performance in Thermodynamic Calculations of Cyclodextrin Host-Guest Binding: Water Models, Partial Charges, and Host Force Field Parameters.Advances in RNA molecular dynamics: a simulator's guide to RNA force fields.How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular Dynamics.Empirical Corrections to the Amber RNA Force Field with Target Metadynamics.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.Effect of single-residue bulges on RNA double-helical structures: crystallographic database analysis and molecular dynamics simulation studies.Physics-based all-atom modeling of RNA energetics and structure.Mapping the Universe of RNA Tetraloop Folds.Simultaneous NMR characterisation of multiple minima in the free energy landscape of an RNA UUCG tetraloop.Effects of osmolytes on stable UUCG tetraloops and their preference for a CG closing base pair.Intrinsic structural variability in GNRA-like tetraloops: insight from molecular dynamics simulation.Unraveling Mg2+-RNA binding with atomistic molecular dynamics.Molecular Dynamics Simulations Reveal an Interplay between SHAPE Reagent Binding and RNA Flexibility.RNA force field with accuracy comparable to state-of-the-art protein force fields.A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs.AMOEBA Polarizable Atomic Multipole Force Field for Nucleic Acids.Molecular Dynamics Correctly Models the Unusual Major Conformation of the GAGU RNA Internal Loop and with NMR Reveals an Unusual Minor Conformation.Designing the Sniper: Improving Targeted Human Cytolytic Fusion Proteins for Anti-Cancer Therapy via Molecular Simulation.Conformational ensembles of RNA oligonucleotides from integrating NMR and molecular simulations.Are Amyloid Fibrils RNA-Traps? A Molecular Dynamics Perspective.
P2860
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P2860
Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields.
description
2015 nî lūn-bûn
@nan
2015年の論文
@ja
2015年論文
@yue
2015年論文
@zh-hant
2015年論文
@zh-hk
2015年論文
@zh-mo
2015年論文
@zh-tw
2015年论文
@wuu
2015年论文
@zh
2015年论文
@zh-cn
name
Highly sampled tetranucleotide ...... on of common RNA force fields.
@ast
Highly sampled tetranucleotide ...... on of common RNA force fields.
@en
type
label
Highly sampled tetranucleotide ...... on of common RNA force fields.
@ast
Highly sampled tetranucleotide ...... on of common RNA force fields.
@en
prefLabel
Highly sampled tetranucleotide ...... on of common RNA force fields.
@ast
Highly sampled tetranucleotide ...... on of common RNA force fields.
@en
P2093
P2860
P356
P1433
P1476
Highly sampled tetranucleotide ...... on of common RNA force fields.
@en
P2093
Christina Bergonzo
Daniel R Roe
Niel M Henriksen
P2860
P304
P356
10.1261/RNA.051102.115
P407
P577
2015-06-29T00:00:00Z