High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations
about
Close encounters with DNARNA folding pathways in stop motion.Free energy landscape and transition pathways from Watson-Crick to Hoogsteen base pairing in free duplex DNASteric interactions lead to collective tilting motion in the ribosome during mRNA-tRNA translocationSynthesis, base pairing and structure studies of geranylated RNAHow EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosomeStacking in RNA: NMR of Four Tetramers Benchmark Molecular DynamicsComputational investigation of RNA CUG repeats responsible for myotonic dystrophy 1Characterizing RNA ensembles from NMR data with kinematic models.Predicting structure and stability for RNA complexes with intermolecular loop-loop base-pairingTheory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.Enhanced Conformational Sampling Using Replica Exchange with Collective-Variable Tempering.RNA approaches the B-form in stacked single strand dinucleotide contexts.Efficient in silico exploration of RNA interhelical conformations using Euler angles and WExplorePredicting the Kinetics of RNA Oligonucleotides Using Markov State Models.Structural fidelity and NMR relaxation analysis in a prototype RNA hairpinThe OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systemsFree energy landscape and multiple folding pathways of an H-type RNA pseudoknot.CXCR2 Inhibition Combined with Sorafenib Improved Antitumor and Antiangiogenic Response in Preclinical Models of Ovarian CancerEvidence That Antibiotics Bind to Human Mitochondrial Ribosomal RNA Has Implications for Aminoglycoside Toxicity.Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields.Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments.Parmbsc1: a refined force field for DNA simulations.Understanding the kinetic mechanism of RNA single base pair formationHairpins participating in folding of human telomeric sequence quadruplexes studied by standard and T-REMD simulations.Using in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators.Free-energy landscape of a hyperstable RNA tetraloop.RNA does the folding dance of twist, turn, stack.Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide.Optimization of an AMBER force field for the artificial nucleic acid, LNA, and benchmarking with NMR of L(CAAU).Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA.Sequence-dependent folding landscapes of adenine riboswitch aptamers.Molecular modeling of nucleic Acid structure: setup and analysis.Progress and Current Challenges in Modeling Large RNAs.A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry-mass spectrometry.Advances in RNA molecular dynamics: a simulator's guide to RNA force fields.How to understand atomistic molecular dynamics simulations of RNA and protein-RNA complexes?Revised RNA Dihedral Parameters for the Amber Force Field Improve RNA Molecular Dynamics.Mutational robustness and resilience of a replicative cis-element of RNA virus: Promiscuity, limitations, relevance.Large-Scale Analysis of 48 DNA and 48 RNA Tetranucleotides Studied by 1 μs Explicit-Solvent Molecular Dynamics Simulations
P2860
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P2860
High-resolution reversible folding of hyperstable RNA tetraloops using molecular dynamics simulations
description
2013 nî lūn-bûn
@nan
2013 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2013 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
name
High-resolution reversible fol ...... molecular dynamics simulations
@ast
High-resolution reversible fol ...... molecular dynamics simulations
@en
High-resolution reversible fol ...... molecular dynamics simulations
@nl
type
label
High-resolution reversible fol ...... molecular dynamics simulations
@ast
High-resolution reversible fol ...... molecular dynamics simulations
@en
High-resolution reversible fol ...... molecular dynamics simulations
@nl
prefLabel
High-resolution reversible fol ...... molecular dynamics simulations
@ast
High-resolution reversible fol ...... molecular dynamics simulations
@en
High-resolution reversible fol ...... molecular dynamics simulations
@nl
P2860
P3181
P356
P1476
High-resolution reversible fol ...... molecular dynamics simulations
@en
P2093
Angel E García
P2860
P304
16820-16825
P3181
P356
10.1073/PNAS.1309392110
P407
P50
P577
2013-09-16T00:00:00Z