Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung - Wikidata - awgldk - TriplyDB

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

http://www.wikidata.org/entity/Q35991304

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Cystic fibrosis therapy: a community ecology perspective Lung microbiome for clinicians. New discoveries about bugs in healthy and diseased lungs.Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data The use of informativity in the development of robust viromics-based examinations Cheating by type 3 secretion system-negative Pseudomonas aeruginosa during pulmonary infection.Towards diagnostic metagenomics of Campylobacter in fecal samples.The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography.Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients Development of an ex vivo porcine lung model for studying growth, virulence, and signaling of Pseudomonas aeruginosa.Grinder: a versatile amplicon and shotgun sequence simulator Bacteriophage adhering to mucus provide a non-host-derived immunity.Disease-specific alterations in the enteric virome in inflammatory bowel disease.Exploring the parallel development of microbial systems in neonates with cystic fibrosis.Unbiased approach for virus detection in skin lesions.Sequencing the human microbiome in health and disease.Pseudomonas aeruginosa adaptation to lungs of cystic fibrosis patients leads to lowered resistance to phage and protist enemies The lung mycobiome: an emerging field of the human respiratory microbiome.Microbiome in cystic fibrosis: Shaping polymicrobial interactions for advances in antibiotic therapy.Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples.The daily dynamics of cystic fibrosis airway microbiota during clinical stability and at exacerbation The microbiome at the pulmonary alveolar niche and its role in Mycobacterium tuberculosis infection COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.wrwyrggrywrw is a single-chain functional analog of the Holliday junction-binding homodimer, (wrwycr)2.Enrichment of the lung microbiome with oral taxa is associated with lung inflammation of a Th17 phenotype.Pneumonia pathogen detection and microbial interactions in polymicrobial episodes.A Different Microbiome Gene Repertoire in the Airways of Cystic Fibrosis Patients with Severe Lung Disease.Translational Aspects of the Human Respiratory Virome.Viruses in cystic fibrosis patients' airways.The Perioperative Lung Transplant Virome: Torque Teno Viruses Are Elevated in Donor Lungs and Show Divergent Dynamics in Primary Graft Dysfunction.High-throughput sequencing exclusively identified a novel Torque teno virus genotype in serum of a patient with fatal fever.Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosa cystic fibrosis bacterial isolates.A chronic rhinosinusitis-derived isolate of Pseudomonas aeruginosa induces acute and pervasive effects on the murine upper airway microbiome and host immune response.Metagenomic sequencing of expressed prostate secretions.Piggyback-the-Winner in host-associated microbial communities A general protein O-glycosylation system within the Burkholderia cepacia complex is involved in motility and virulence.The cystic fibrosis lung microbiome.Extension of the viral ecology in humans using viral profile hidden Markov models.Cangene gold medal award lecture - Genomic analysis and modification of Burkholderia cepacia complex bacteriophages.The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation.Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity.

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Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

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American Journal of Respiratory Cell and Molecular Biology

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Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung

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Breeann Kirby

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Dana Willner

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Douglas Conrad

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Matthew R Haynes

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Merry Youle

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Mike Furlan

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Nicole Hanson

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Paul B Rainey

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Robert Schmieder

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Yan Wei Lim

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P2860

Analysis of the lung microbiome in the "healthy" smoker and in COPD

The ubiquity and impressive genomic diversity of human skin papillomaviruses suggest a commensalic nature of these viruses

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

MRBAYES: Bayesian inference of phylogenetic trees

CAP3: A DNA sequence assembly program

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

Prodigal: prokaryotic gene recognition and translation initiation site identification

Circos: an information aesthetic for comparative genomics

Functional metagenomic profiling of nine biomes

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cystic fibrosis

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