Sequence and chromatin determinants of cell-type-specific transcription factor binding
about
What does our genome encode?Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shapeEpigenetic mechanisms and developmental choice hierarchies in T-lymphocyte developmentAffinity regression predicts the recognition code of nucleic acid–binding proteinsMassively parallel cis-regulatory analysis in the mammalian central nervous systemLandscape of transcription in human cellsChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq dataGenome-wide predictors of NF-κB recruitment and transcriptional activityGenetic and epigenetic variation in the lineage specification of regulatory T cells.High mobility group N proteins modulate the fidelity of the cellular transcriptional profile in a tissue- and variant-specific manner.An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding.Incorporating chromatin accessibility data into sequence-to-expression modelingRole of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation.Comparison of REST cistromes across human cell types reveals common and context-specific functionsInflammation-induced repression of chromatin bound by the transcription factor Foxp3 in regulatory T cellsAbsence of a simple code: how transcription factors read the genomeTranscription factor binding predicts histone modifications in human cell linesHigh-throughput functional testing of ENCODE segmentation predictions.Cell specific CD44 expression in breast cancer requires the interaction of AP-1 and NFκB with a novel cis-element.Dynamic transcription factor activity and networks during ErbB2 breast oncogenesis and targeted therapy.Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis.The next generation of transcription factor binding site predictionDivergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions.Live cell imaging unveils multiple domain requirements for in vivo dimerization of the glucocorticoid receptor.Base-resolution methylation patterns accurately predict transcription factor bindings in vivo.Integrating diverse datasets improves developmental enhancer predictionEnhanced regulatory sequence prediction using gapped k-mer features.Modeling the relationship of epigenetic modifications to transcription factor binding.Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility.SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element MapsInvestigation of Gene Regulatory Networks Associated with Autism Spectrum Disorder Based on MiRNA Expression in China.Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest ModelsPredicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.In Vivo Chromatin Targets of the Transcription Factor Yin Yang 2 in Trophoblast Stem Cells.Decoding the human genome
P2860
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P2860
Sequence and chromatin determinants of cell-type-specific transcription factor binding
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@ast
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@en
type
label
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@ast
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@en
prefLabel
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@ast
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@en
P2860
P356
P1433
P1476
Sequence and chromatin determinants of cell-type-specific transcription factor binding
@en
P2093
Aaron Arvey
Phaedra Agius
P2860
P304
P356
10.1101/GR.127712.111
P577
2012-09-01T00:00:00Z