High-throughput functional testing of ENCODE segmentation predictions.
about
Decoding enhancers using massively parallel reporter assaysMassively parallel cis-regulatory analysis in the mammalian central nervous systemA genome-integrated massively parallel reporter assay reveals DNA sequence determinants of cis-regulatory activity in neural cellsRole of non-coding sequence variants in cancer.High-resolution interrogation of functional elements in the noncoding genomeIdentifying transcriptional cis-regulatory modules in animal genomes.Long-range regulatory interactions at the 4q25 atrial fibrillation risk locus involve PITX2c and ENPEP.Occupancy by key transcription factors is a more accurate predictor of enhancer activity than histone modifications or chromatin accessibility.Understanding how cis-regulatory function is encoded in DNA sequence using massively parallel reporter assays and designed sequences.Inferring regulatory element landscapes and transcription factor networks from cancer methylomes.Interactions between pluripotency factors specify cis-regulation in embryonic stem cellsDirect Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.Genomic approaches for understanding the genetics of complex disease.Stringent comparative sequence analysis reveals SOX10 as a putative inhibitor of glial cell differentiation.Early maturation and distinct tau pathology in induced pluripotent stem cell-derived neurons from patients with MAPT mutations.Genome-wide mapping of autonomous promoter activity in human cellsAccurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sitesComprehensive benchmarking reveals H2BK20 acetylation as a distinctive signature of cell-state-specific enhancers and promoters.Effects on the transcriptome upon deletion of a distal element cannot be predicted by the size of the H3K27Ac peak in human cellsA Simple Grammar Defines Activating and Repressing cis-Regulatory Elements in PhotoreceptorsTranscriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons.Systematic dissection of genomic features determining transcription factor binding and enhancer function.Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes.Progress and challenges in bioinformatics approaches for enhancer identification.The Role of Noncoding Genetic Variation in Isolated Orofacial Clefts.Inducible chromatin priming is associated with the establishment of immunological memory in T cells.Predicting gene expression in massively parallel reporter assays: A comparative study.A new computational method to predict transcriptional activity of a DNA sequence from diverse datasets of massively parallel reporter assays.Decoding transcriptional enhancers: Evolving from annotation to functional interpretationPredicting enhancer activity and variant impact using gkm-SVM.T Cell Receptor and Cytokine Signaling Can Function at Different Stages to Establish and Maintain Transcriptional Memory and Enable T Helper Cell Differentiation.Perspectives on Gene Regulatory Network Evolution.Recent advances in high-throughput approaches to dissect enhancer functionHigh-throughput mapping of regulatory DNA.Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes.Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions.QuASAR-MPRA: Accurate allele-specific analysis for massively parallel reporter assays.VarCards: an integrated genetic and clinical database for coding variants in the human genome.Functional assessment of human enhancer activities using whole-genome STARR-sequencing.
P2860
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P2860
High-throughput functional testing of ENCODE segmentation predictions.
description
2014 nî lūn-bûn
@nan
2014 թուականի Յուլիսին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի հուլիսին հրատարակված գիտական հոդված
@hy
2014年の論文
@ja
2014年論文
@yue
2014年論文
@zh-hant
2014年論文
@zh-hk
2014年論文
@zh-mo
2014年論文
@zh-tw
2014年论文
@wuu
name
High-throughput functional testing of ENCODE segmentation predictions.
@ast
High-throughput functional testing of ENCODE segmentation predictions.
@en
High-throughput functional testing of ENCODE segmentation predictions.
@nl
type
label
High-throughput functional testing of ENCODE segmentation predictions.
@ast
High-throughput functional testing of ENCODE segmentation predictions.
@en
High-throughput functional testing of ENCODE segmentation predictions.
@nl
prefLabel
High-throughput functional testing of ENCODE segmentation predictions.
@ast
High-throughput functional testing of ENCODE segmentation predictions.
@en
High-throughput functional testing of ENCODE segmentation predictions.
@nl
P2093
P2860
P356
P1433
P1476
High-throughput functional testing of ENCODE segmentation predictions
@en
P2093
Barak A Cohen
Christopher Fiore
Jamie C Kwasnieski
P2860
P304
P356
10.1101/GR.173518.114
P50
P577
2014-07-17T00:00:00Z